raeslab / QMPLinks
Quantitative Microbiome Profiling
☆15Updated 4 years ago
Alternatives and similar repositories for QMP
Users that are interested in QMP are comparing it to the libraries listed below
Sorting:
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- ☆20Updated 5 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 5 years ago
- ☆17Updated last year
- tidyMicro GitHup Repository☆21Updated 4 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 months ago
- A manually curated database of human gut metabolic modules.☆17Updated 7 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆29Updated 6 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- ☆14Updated 3 years ago
- USDA Nutrition codes Tree☆10Updated 5 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated last year
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- ☆25Updated 5 years ago
- ☆28Updated last year
- ☆12Updated 8 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- Do microbiome analysis with dada2 and phyloseq object☆14Updated last year
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆16Updated last year
- A very simple BLAST filtering pipeline☆18Updated 11 years ago
- Linear Decomposition Model☆25Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆39Updated 10 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Updated 4 months ago