Quantitative Microbiome Profiling
☆15Mar 13, 2021Updated 5 years ago
Alternatives and similar repositories for QMP
Users that are interested in QMP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 6 years ago
- MR project investigating the mediating role of mammographic density in the childhood body size and breast cancer relationship☆11May 14, 2024Updated 2 years ago
- mapping files for MetaCyc pathway☆13Sep 14, 2019Updated 6 years ago
- ☆12Jun 12, 2019Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆23Nov 6, 2020Updated 5 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- Biobakery formulae for the Homebrew package manager☆11Sep 9, 2019Updated 6 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Jul 13, 2018Updated 7 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 4 months ago
- Cross-disease comparison of case-control gut microbiome studies☆69Feb 2, 2019Updated 7 years ago
- Percentile-normalization method for correcting batch effects in case-control studies☆12Oct 26, 2019Updated 6 years ago
- A LaTeX template for Masters (M.Sc.) and Doctorate (Ph.D) theses in the Tel-Aviv University.☆10Feb 4, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology☆25May 22, 2019Updated 6 years ago
- ☆25Oct 9, 2020Updated 5 years ago
- Order and orientation of complete bacterial genomes☆29Jul 11, 2025Updated 10 months ago
- ☆18Nov 19, 2024Updated last year
- ☆14May 7, 2022Updated 4 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 6 years ago
- ☆16May 21, 2024Updated 2 years ago
- Various scripts and supporting files used in building the Bio-Linux ISO☆11Sep 5, 2017Updated 8 years ago
- Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…☆37Sep 23, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package to Automatically Check R Homework Assignments☆11Jul 10, 2019Updated 6 years ago
- Code base, outputs, scoring guidelines and annotations for ChatGPT NCCN evaluation | Paper: https://jamanetwork.com/journals/jamaoncology…☆18Aug 27, 2023Updated 2 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 5 years ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆13Apr 14, 2022Updated 4 years ago
- Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper☆18Dec 25, 2023Updated 2 years ago
- ☆20Jun 8, 2020Updated 5 years ago
- vcf file manipulation☆22Jul 9, 2015Updated 10 years ago
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- Lollipop-diagram to visualize genomic mutations☆20Sep 3, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Salmonella serotyping from genome sequencing data☆11Sep 3, 2018Updated 7 years ago
- CCLasso: Correlation Inference for Compositional Data through Lasso☆17Jan 8, 2016Updated 10 years ago
- R package to predict microbial loads☆18May 14, 2026Updated last week
- Neural networks for microbe-metabolite interaction analysis☆131Nov 4, 2022Updated 3 years ago
- Create and maintain phylogenetic "reference packages" of biological sequences.☆22May 13, 2026Updated last week
- variant discovery and annotation using GATK and Ensembl☆17Jun 27, 2013Updated 12 years ago
- A series of small Biopython scripts for downloading sequence data off NCBI's Genbank.☆15May 2, 2017Updated 9 years ago