raeslab / QMP
Quantitative Microbiome Profiling
☆15Updated 3 years ago
Alternatives and similar repositories for QMP:
Users that are interested in QMP are comparing it to the libraries listed below
- ☆13Updated 5 years ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- A comprehensive and customizable R package for microbiome analysis.☆21Updated 2 years ago
- tidyMicro GitHup Repository☆17Updated 3 years ago
- A fast method for analysis of composition of microbiomes☆8Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 9 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- ☆14Updated 3 months ago
- Set of useful functions and scripts for analyzing amplicon Miseq data.☆17Updated 8 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 10 months ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆20Updated 2 years ago
- A very simple BLAST filtering pipeline☆18Updated 10 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated 10 months ago
- ☆26Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last week
- USDA Nutrition codes Tree☆10Updated 5 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 11 months ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 4 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated 11 months ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Updated 9 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆18Updated 4 years ago
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆20Updated 6 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- Do microbiome analysis with dada2 and phyloseq object☆13Updated 4 months ago
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆17Updated last year