raeslab / QMPLinks
Quantitative Microbiome Profiling
☆15Updated 4 years ago
Alternatives and similar repositories for QMP
Users that are interested in QMP are comparing it to the libraries listed below
Sorting:
- tidyMicro GitHup Repository☆19Updated 3 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated last year
- Microbiome Classifier Pipeline for Pacific Biosciences 16s Data☆11Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- USDA Nutrition codes Tree☆10Updated 5 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 3 months ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 months ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 4 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆16Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- ☆20Updated 4 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Updated 8 years ago
- ☆43Updated 8 years ago
- Linear Decomposition Model☆24Updated 2 years ago
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Updated 9 years ago
- A very simple BLAST filtering pipeline☆18Updated 11 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆38Updated 9 years ago
- ggtree version of plotTree.R☆18Updated 6 years ago
- R package for computing alpha and beta contributional diversity metrics☆10Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- ☆15Updated 8 months ago
- Microbiome research☆21Updated 3 years ago
- Do microbiome analysis with dada2 and phyloseq object☆14Updated 10 months ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 5 years ago