raeslab / QMPLinks
Quantitative Microbiome Profiling
☆15Updated 4 years ago
Alternatives and similar repositories for QMP
Users that are interested in QMP are comparing it to the libraries listed below
Sorting:
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆16Updated last year
- tidyMicro GitHup Repository☆19Updated 3 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 weeks ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- ☆15Updated 7 months ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆21Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- ☆13Updated 5 years ago
- A manually curated database of human gut metabolic modules.☆18Updated 6 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆37Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 4 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 2 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- ☆43Updated 7 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated 2 years ago
- ☆20Updated 5 years ago
- A fast method for analysis of composition of microbiomes☆8Updated 3 years ago
- ☆27Updated last year
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago