accessory functions for processing microbial community data
☆12Dec 24, 2022Updated 3 years ago
Alternatives and similar repositories for microfiltR
Users that are interested in microfiltR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 2 years ago
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated last year
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆36Jul 15, 2019Updated 6 years ago
- Miscellaneous functions for metagenomic analysis.☆53Feb 20, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Updated this week
- Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."☆21Dec 30, 2019Updated 6 years ago
- 2025 RAD microbes boot camp☆15Apr 30, 2025Updated 10 months ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 6 years ago
- An R Package for Integrated Analysis and Visualization of Microbiome Data☆18Feb 19, 2026Updated last month
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Oct 23, 2018Updated 7 years ago
- tidyMicro GitHup Repository☆21Nov 17, 2021Updated 4 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Feb 5, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A set of R scripts for the analysis of microbial profiles☆41Jan 9, 2026Updated 2 months ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- 16S taxonomy assignment using an ecosystem-specific database.☆17Feb 13, 2023Updated 3 years ago
- Do microbiome analysis with dada2 and phyloseq object☆15Oct 9, 2024Updated last year
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆84Nov 3, 2025Updated 4 months ago
- A lightweight kmer-based algorithm for designing diagnostic CRISPR assays using genome data.☆13Aug 19, 2024Updated last year
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 6 years ago
- Count Regression for Correlated Observations with the Beta-binomial☆107Nov 13, 2025Updated 4 months ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Oct 10, 2025Updated 5 months ago
- ☆12Jun 12, 2019Updated 6 years ago
- ☆43Nov 20, 2017Updated 8 years ago
- ☆17Nov 19, 2024Updated last year
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Nov 30, 2020Updated 5 years ago
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆11Aug 26, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Command line client and Python libraries for CosmosID API☆12Oct 28, 2025Updated 4 months ago
- MAG Circularization Method☆32Nov 4, 2025Updated 4 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Nov 23, 2022Updated 3 years ago
- mGEMS Genomic epidemiology with mixed samples☆15Sep 4, 2024Updated last year
- Functions to manipulate and visualize microbial community data☆13Mar 11, 2026Updated 2 weeks ago
- SourceTracker2☆86Jul 10, 2024Updated last year
- A repository for my work on rCRUX☆12Jun 21, 2024Updated last year