Alternatives and similar repositories for tagseq-qiime2-snakemake

Users that are interested in tagseq-qiime2-snakemake are comparing it to the libraries listed below

• IEkAdN / BactSNP
  ☆18Updated 6 years ago
• twbattaglia / koeken
  A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
  ☆26Updated 8 years ago
• attayeb / snaq
  Qiime2 snakemake pipeline
  ☆19Updated last year
• quadram-institute-bioscience / dadaist2
  Dadaist2 🟨 Highway to R
  ☆13Updated 5 months ago
• deng-lab / viroprofiler
  A containerized bioinformatics pipeline for viral metagenomic data analysis
  ☆35Updated last year
• meglecz / mkCOInr
  Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options
  ☆16Updated 3 months ago
• katiesaund / hogwash
  Three bacterial GWAS methods all rolled into one easy-to-use R package
  ☆22Updated last year
• ngs-docs / 2018-cicese-metatranscriptomics
  repo for cicese metatranscriptomics workshop, nov 2018
  ☆14Updated 5 years ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆36Updated 4 months ago
• SilasK / 16S-dada2
  Snakemake pipeline for amplicon sequencing using dada2
  ☆10Updated 2 years ago
• Grice-Lab / HmmUFOtu
  An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing
  ☆11Updated 6 months ago
• liaoherui / StrainScan
  High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
  ☆41Updated last year
• sanger-pathogens / mlst_check
  Multilocus sequence typing by blast using the schemes from PubMLST
  ☆30Updated 3 years ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• adlape95 / Spaghetti
  Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing
  ☆18Updated last year
• gnanibioinfo / EzMAP
  ☆10Updated 4 years ago
• xiaoli-dong / metaerg
  ☆41Updated 4 years ago
• smangul1 / MiCoP
  MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.
  ☆15Updated 3 years ago
• EnvGen / DEGEPRIME
  A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies
  ☆32Updated 2 years ago
• taxprofiler / taxpasta
  TAXnomic Profile Aggregation and STAndardisation
  ☆41Updated 2 weeks ago
• bhattlab / StrainSifter
  A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).
  ☆20Updated 7 years ago
• broadinstitute / StrainGE
  strain-level analysis tools
  ☆39Updated 10 months ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated 11 months ago
• SilentGene / Bio-py
  Some useful python scripts for biologists
  ☆32Updated 9 months ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆30Updated 7 months ago
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆29Updated last year
• FredHutch / nf-anvio-pangenome
  Analyze a set of genomes with the anvi'o pangenome pipeline
  ☆17Updated last year
• jkzorz / SituSeq
  workflows for offline analysis of 16S rRNA Nanopore data
  ☆15Updated 2 years ago
• jessiewu / bacterialGWAS
  A pipeline for performing genome-wide association tests for bacterial genomes.
  ☆27Updated 7 years ago