matsen / pplacerLinks
Phylogenetic placement and downstream analysis
☆86Updated 3 weeks ago
Alternatives and similar repositories for pplacer
Users that are interested in pplacer are comparing it to the libraries listed below
Sorting:
- A listing of software, tools and databases useful for virome analysis☆44Updated this week
- PHANOTATE: a gene caller for phages.☆77Updated 9 months ago
- ☆25Updated 4 years ago
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆59Updated 5 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆80Updated last month
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆60Updated 6 years ago
- Rapid and scalable homolog identification for bacterial genomes☆33Updated 6 years ago
- ☆83Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- GC Skew Test for Bacterial Genomes☆29Updated 2 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Scalable creating/updating of metagenome profiling databases☆62Updated 2 months ago
- SINA - Reference based multiple sequence alignment☆41Updated 4 years ago
- Simple bacterial assembly and annotation pipeline☆77Updated last week
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆98Updated 4 months ago
- SKESA assembler☆124Updated 11 months ago
- A toolbox for improving metagenome-assembled genomes.☆62Updated 4 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Updated 2 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆32Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆44Updated last year
- seqfu - Sequece Fastx Utilities☆120Updated 8 months ago
- Microbiome classification pipeline☆65Updated 4 months ago
- Strain resolver for metagenomics☆78Updated last year
- viralVerify: viral contig verification tool☆72Updated 4 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 2 months ago
- Woltka: a versatile meta'omic data classifier☆75Updated 2 weeks ago
- ☆33Updated 4 years ago
- ☆40Updated 4 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 4 months ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆48Updated 3 years ago