matsen / pplacerLinks
Phylogenetic placement and downstream analysis
☆88Updated 2 months ago
Alternatives and similar repositories for pplacer
Users that are interested in pplacer are comparing it to the libraries listed below
Sorting:
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆58Updated 7 months ago
- ☆25Updated 4 years ago
- A listing of software, tools and databases useful for virome analysis☆52Updated this week
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆99Updated 6 months ago
- REference Sequence annotation and CuRatIon Pipeline☆97Updated 2 weeks ago
- PHANOTATE: a gene caller for phages.☆78Updated 11 months ago
- MEGAN Community Edition☆72Updated last year
- SKESA assembler☆123Updated last year
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Rapid and scalable homolog identification for bacterial genomes☆33Updated 6 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- SINA - Reference based multiple sequence alignment☆41Updated 4 years ago
- seqfu - Sequece Fastx Utilities☆122Updated last month
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆110Updated last year
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Updated last month
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆61Updated 6 years ago
- ☆84Updated 2 years ago
- MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds☆33Updated 9 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 9 years ago
- ☆33Updated 4 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- Microbiome classification pipeline☆65Updated 6 months ago
- GC Skew Test for Bacterial Genomes☆30Updated 3 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆50Updated 3 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆100Updated 6 years ago