MadsAlbertsen / miscperlscripts
Small collection of random useful perl scripts
☆21Updated 10 years ago
Alternatives and similar repositories for miscperlscripts
Users that are interested in miscperlscripts are comparing it to the libraries listed below
Sorting:
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆21Updated last year
- Metagenomic pipeline and other general scripts used in the lab.☆35Updated 3 months ago
- 🗻 Visualization of genome/gene sequence synteny☆39Updated last year
- Find Unique genomic Regions☆29Updated last month
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆59Updated 8 months ago
- ☆43Updated last year
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆31Updated 2 weeks ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆39Updated 6 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆34Updated 7 years ago
- CRyPTIC data processing pipelines☆34Updated 10 months ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆19Updated 3 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- Whole genome core alignments from multiple draft genomes☆13Updated 8 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- scripts to parse and analyse MCScanX collinearity output☆31Updated 5 years ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- ☆23Updated 6 years ago