MadsAlbertsen / miscperlscriptsLinks
Small collection of random useful perl scripts
☆21Updated 11 years ago
Alternatives and similar repositories for miscperlscripts
Users that are interested in miscperlscripts are comparing it to the libraries listed below
Sorting:
- Metagenomic pipeline and other general scripts used in the lab.☆35Updated 6 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Genome Annotation Without Nightmares☆46Updated 6 months ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- genomic alignment similarity search tool☆18Updated 2 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆60Updated 7 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆37Updated last year
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated last year
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Updated 2 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆52Updated last month
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆50Updated 6 months ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 4 years ago
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 10 months ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago