MadsAlbertsen / miscperlscripts
Small collection of random useful perl scripts
☆21Updated 10 years ago
Alternatives and similar repositories for miscperlscripts:
Users that are interested in miscperlscripts are comparing it to the libraries listed below
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆19Updated 10 months ago
- Metagenomic pipeline and other general scripts used in the lab.☆35Updated 3 weeks ago
- ☆22Updated 5 years ago
- Whole genome core alignments from multiple draft genomes☆12Updated 8 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 7 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- CRyPTIC data processing pipelines☆32Updated 7 months ago
- Remove lambda phage reads from a fastq file☆28Updated 2 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Find Unique genomic Regions☆29Updated last month
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Updated 3 years ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), ad…☆32Updated 4 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆26Updated 11 months ago
- Utilities written for bioinformatics☆18Updated 2 years ago
- genomic alignment similarity search tool☆19Updated 8 months ago
- 🗻 Visualization of genome/gene sequence synteny☆37Updated last year
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 6 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated last year
- ☆43Updated 10 months ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- ☆20Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- TAXnomic Profile Aggregation and STAndardisation☆35Updated 3 months ago
- ☆32Updated 4 years ago