A comprehensive and customizable R package for microbiome analysis.
☆24Jun 12, 2026Updated 2 months ago
Alternatives and similar repositories for MicrobiomeR
Users that are interested in MicrobiomeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 7 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- A repository for large-scale microbiome datasets, formatted for phyloseq☆41Apr 8, 2024Updated 2 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 4 years ago
- ☆12Oct 17, 2017Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10May 14, 2026Updated 3 months ago
- Visualize microbiome data with black magic ggtree☆68Sep 3, 2020Updated 5 years ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆118Apr 11, 2023Updated 3 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆21Oct 17, 2023Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆28Aug 24, 2022Updated 3 years ago
- scripts for microbiome analysis☆12Jul 25, 2024Updated 2 years ago
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆16Nov 30, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- supplementary tables and files☆11Oct 13, 2023Updated 2 years ago
- SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualiz…☆13Feb 5, 2025Updated last year
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆13Jun 24, 2023Updated 3 years ago
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- microbiome R package☆318May 12, 2026Updated 3 months ago
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 3 months ago
- ☆43Jul 31, 2017Updated 9 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆25Jan 24, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Jan 30, 2025Updated last year
- A continually expanding collection of microbiome analysis tools☆19May 25, 2026Updated 2 months ago
- Perform microbiome-wide association studies with a variety of models☆18Feb 14, 2017Updated 9 years ago
- A book about munging complex spreadsheets in R with tidyxl and unpivotr☆22Nov 23, 2021Updated 4 years ago
- An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵☆28Jul 14, 2026Updated last month
- Tools for visualising microbial community amplicon data☆74Nov 3, 2025Updated 9 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Nov 23, 2022Updated 3 years ago
- An R package for downstream data analysis of microbiome omics data☆290Jul 28, 2026Updated 2 weeks ago
- ☆10Jul 4, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Jun 10, 2020Updated 6 years ago
- ☆15May 7, 2022Updated 4 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆11Jul 13, 2018Updated 8 years ago
- Python Client Library for the G2P Portal API☆15May 20, 2026Updated 2 months ago
- Site that contains musings and code for compositional analysis of high throughput sequencing experiments☆17Apr 18, 2024Updated 2 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Mar 31, 2026Updated 4 months ago
- PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes☆26Dec 4, 2023Updated 2 years ago