vallenderlab / MicrobiomeRLinks
A comprehensive and customizable R package for microbiome analysis.
☆23Updated this week
Alternatives and similar repositories for MicrobiomeR
Users that are interested in MicrobiomeR are comparing it to the libraries listed below
Sorting:
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated last year
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- Linear Decomposition Model☆24Updated last year
- functions for analyzing phyloseq data☆27Updated 4 months ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆33Updated 5 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Updated 6 years ago
- A microbiome analysis toolkit for R☆22Updated last year
- accessory functions for processing microbial community data☆12Updated 2 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- ☆13Updated 5 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- ☆20Updated 4 years ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆35Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆37Updated 9 years ago
- diversity estimation under ecological networks☆83Updated last month
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Simple R utilities for working with HMMER☆20Updated 8 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago