A comprehensive and customizable R package for microbiome analysis.
β24Jun 12, 2026Updated 2 months ago
Alternatives and similar repositories for MicrobiomeR
Users that are interested in MicrobiomeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Handy tools for Microbiome analysis in Rβ18May 22, 2019Updated 7 years ago
- Dadaist2 π¨ Highway to Rβ13Mar 7, 2025Updated last year
- A repository for large-scale microbiome datasets, formatted for phyloseqβ41Apr 8, 2024Updated 2 years ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOMβ¦β61Jun 11, 2022Updated 4 years ago
- β12Oct 17, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 16S rRNA Sequencing Data from the Human Microbiome Projectβ10May 14, 2026Updated 3 months ago
- Visualize microbiome data with black magic ggtreeβ68Sep 3, 2020Updated 6 years ago
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualizationβ118Apr 11, 2023Updated 3 years ago
- Microbiome researchβ21May 24, 2022Updated 4 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.β12Jan 15, 2021Updated 5 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studiβ¦β34Nov 12, 2020Updated 5 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencingβ21Oct 17, 2023Updated 2 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.β28Aug 24, 2022Updated 4 years ago
- scripts for microbiome analysisβ12Jul 25, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer β’ AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grβ¦β16Nov 30, 2023Updated 2 years ago
- supplementary tables and filesβ11Oct 13, 2023Updated 2 years ago
- SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualizβ¦β13Feb 5, 2025Updated last year
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Siβ¦β13Jun 24, 2023Updated 3 years ago
- Plot microbiome time series in parallelβ27Nov 7, 2023Updated 2 years ago
- METAgenomic LONgitudinal Differential Abundance methodβ16Dec 17, 2019Updated 6 years ago
- microbiome R packageβ318Updated this week
- A workshop on microbiome analysis using Bioconductorβ16Jun 20, 2019Updated 7 years ago
- β43Jul 31, 2017Updated 9 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.β25Jan 24, 2024Updated 2 years ago
- β13Jan 30, 2025Updated last year
- A continually expanding collection of microbiome analysis toolsβ19May 25, 2026Updated 3 months ago
- Perform microbiome-wide association studies with a variety of modelsβ18Feb 14, 2017Updated 9 years ago
- A book about munging complex spreadsheets in R with tidyxl and unpivotrβ22Nov 23, 2021Updated 4 years ago
- An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. π΅β28Jul 14, 2026Updated last month
- Tools for visualising microbial community amplicon dataβ74Nov 3, 2025Updated 10 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.β32Nov 23, 2022Updated 3 years ago
- A web application framework for analysis and visualization of High throughput Sequencing metagenomic dataβ10Nov 21, 2016Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R package for downstream data analysis of microbiome omics dataβ291Updated this week
- β10Jul 4, 2019Updated 7 years ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing dataβ31Jun 10, 2020Updated 6 years ago
- β15May 7, 2022Updated 4 years ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Studyβ11Jul 13, 2018Updated 8 years ago
- Python Client Library for the G2P Portal APIβ15May 20, 2026Updated 3 months ago
- Site that contains musings and code for compositional analysis of high throughput sequencing experimentsβ17Apr 18, 2024Updated 2 years ago