raeslab / GMMsLinks
A manually curated database of human gut metabolic modules.
☆17Updated 7 years ago
Alternatives and similar repositories for GMMs
Users that are interested in GMMs are comparing it to the libraries listed below
Sorting:
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- ☆31Updated 4 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 5 months ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆10Updated 7 years ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- Metagenome analysis using the Kraken software suite☆35Updated 3 years ago
- gutSMASH☆55Updated last week
- Time-Course Multi-Omics data integration☆25Updated last year
- ☆29Updated 11 months ago
- Gene Co-expression Network analysis pipeline☆25Updated 2 years ago
- pathway based data integration and visualization☆41Updated 6 months ago
- Analysis framework for integrating gut microbiome and host gene expression data☆33Updated 3 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated 2 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- visual analysis of your VCF files☆36Updated 2 years ago
- ☆24Updated 5 years ago
- An interactive web-tool for RNA-seq analysis☆69Updated 7 months ago
- A repository for large-scale microbiome datasets, formatted for phyloseq☆38Updated last year
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 2 months ago
- ☆25Updated 5 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- ☆11Updated 5 years ago
- ☆14Updated 3 years ago
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆16Updated 3 months ago
- ☆15Updated this week
- OPAL: Open-community Profiling Assessment tooL☆29Updated 8 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 3 months ago
- The Mouse Gastrointestinal Bacteria Catalogue☆15Updated 3 years ago