raeslab / GMMsLinks
A manually curated database of human gut metabolic modules.
☆17Updated 7 years ago
Alternatives and similar repositories for GMMs
Users that are interested in GMMs are comparing it to the libraries listed below
Sorting:
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- ☆33Updated 5 years ago
- pathway based data integration and visualization☆43Updated 9 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated 2 years ago
- Metagenome analysis using the Kraken software suite☆36Updated 3 years ago
- gutSMASH☆57Updated 3 months ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Updated 5 years ago
- ☆11Updated 6 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 2 months ago
- ☆12Updated 8 years ago
- ☆19Updated 2 years ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆41Updated 9 months ago
- a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs☆12Updated 4 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆34Updated 3 years ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆12Updated 3 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆22Updated 8 years ago
- Time-Course Multi-Omics data integration☆26Updated last year
- Protein Alignment and Detection Interface☆60Updated last year
- ☆18Updated 3 years ago
- ☆29Updated last year
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆25Updated this week
- Gene Co-expression Network analysis pipeline☆25Updated 2 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated 3 weeks ago
- antimicrobial peptide prediction in R☆33Updated last year
- An interactive web-tool for RNA-seq analysis☆70Updated last month
- The Mouse Gastrointestinal Bacteria Catalogue☆15Updated 3 years ago
- ☆38Updated 2 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆42Updated last year
- ☆22Updated 5 years ago