Alternatives and similar repositories for GMMs

Users that are interested in GMMs are comparing it to the libraries listed below

• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 6 years ago
• andreasmock / MetaboDiff
  ☆32Updated 5 years ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆35Updated 3 years ago
• SchlossLab / Topcuoglu_ML_mBio_2020
  Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data
  ☆31Updated 5 years ago
• hzaurzli / MicroWorldOmics
  ☆15Updated 3 weeks ago
• datapplab / pathview
  pathway based data integration and visualization
  ☆41Updated 7 months ago
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆23Updated last year
• BenBeresfordJones / MGBC
  The Mouse Gastrointestinal Bacteria Catalogue
  ☆15Updated 3 years ago
• victoriapascal / gutsmash
  gutSMASH
  ☆55Updated 3 weeks ago
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated 2 years ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆33Updated 4 months ago
• ryangreenj / bioinformatics_tool_recommendation
  ☆19Updated 2 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆36Updated 6 months ago
• shihuang047 / age-prediction
  ☆20Updated 4 years ago
• StewartLab / Stewart_TEDDY_Microbiome_Analysis
  Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study
  ☆10Updated 7 years ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated 2 years ago
• zhouhj1994 / LinDA
  ☆37Updated last year
• SchlossLab / Sze_Obesity_mBio_2016
  ☆12Updated 8 years ago
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• mwang87 / q2_metabolomics
  ☆11Updated 5 years ago
• gavinmdouglas / picrust2_manuscript
  ☆24Updated 5 years ago
• knightlab-analyses / multiomic-cooccurrences
  ☆25Updated 5 years ago
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆34Updated 2 years ago
• SegataLab / hclust2
  Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…
  ☆12Updated 2 years ago
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆69Updated 8 months ago
• ohmeta / metapi
  A general metagenomics data mining system focus on robust microbiome research
  ☆58Updated last year
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆16Updated 3 months ago
• twbattaglia / MicrobeDS
  A repository for large-scale microbiome datasets, formatted for phyloseq
  ☆39Updated last year
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆25Updated last year