Rarefaction scripts
☆18Jan 30, 2026Updated 8 months ago
Alternatives and similar repositories for Rarefaction
Users that are interested in Rarefaction are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Oct 23, 2018Updated 7 years ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.☆16Oct 19, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 3 years ago
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆60May 23, 2019Updated 7 years ago
- Conversion software tool for producing both annotation and tree files for GraPhlAn☆11Feb 2, 2022Updated 4 years ago
- Lightweight resources assembly algorithm☆19May 17, 2017Updated 9 years ago
- NeXML is an exchange standard for representing phyloinformatic data.☆15Feb 23, 2017Updated 9 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- Scripts for calculating features and regression of prokaryote OGT☆26Feb 13, 2024Updated 2 years ago
- Code to run the shiny functions for the MASAME suite☆27Feb 4, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 6 years ago
- MIcrobiomes using Compressive Acceleration☆17Feb 10, 2018Updated 8 years ago
- StrainFinder☆29Jul 8, 2018Updated 8 years ago
- Profiler for metagenomics based on NGLess☆14Feb 22, 2024Updated 2 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- ☆20Feb 13, 2016Updated 10 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 9 years ago
- ☆15Sep 15, 2022Updated 4 years ago
- Estimate metagenomic coverage and sequence diversity☆63Aug 5, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Miscellaneous functions for metagenomic analysis.☆53May 14, 2026Updated 4 months ago
- ☆19Mar 6, 2019Updated 7 years ago
- ☆15Updated this week
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 6 years ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆90Oct 27, 2023Updated 2 years ago
- R package for wrapper functions, preprocessing, NMF and postprocessing☆12Oct 14, 2017Updated 8 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆69Aug 12, 2019Updated 7 years ago
- MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds☆33Nov 26, 2015Updated 10 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Jan 21, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆36Dec 24, 2020Updated 5 years ago
- EMBL GEMs: A collection of GEnome-scale Models for bacterial species☆34Mar 5, 2019Updated 7 years ago
- Make Antarctic data ready for use in PISM.☆12Feb 10, 2025Updated last year
- ☆15Dec 8, 2022Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Jun 13, 2023Updated 3 years ago
- ☆17Feb 9, 2020Updated 6 years ago
- Raw data and scripts used to benchmark eggnog-mapper. Analysis and additional tests cases are provided as a python notebook.☆21Apr 5, 2017Updated 9 years ago