hildebra / RarefactionLinks
Rarefaction scripts
☆16Updated 2 years ago
Alternatives and similar repositories for Rarefaction
Users that are interested in Rarefaction are comparing it to the libraries listed below
Sorting:
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated 2 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆32Updated 8 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆78Updated 5 months ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 5 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- ☆79Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- ☆42Updated 8 years ago
- Sydney Phylogenetics Workshop☆68Updated 6 months ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 9 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- Statistical analysis for sparse high-throughput sequencing☆71Updated last year
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- ☆18Updated 3 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated 2 weeks ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆50Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 6 months ago
- Using ggtree to build phylogenetic trees☆50Updated last year
- ☆23Updated 7 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- SourceTracker2☆83Updated last year
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆106Updated 11 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆61Updated last year