danielecook / seq-collection
☆14Updated 4 years ago
Alternatives and similar repositories for seq-collection:
Users that are interested in seq-collection are comparing it to the libraries listed below
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Updated 3 years ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated last year
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆50Updated 3 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆32Updated 4 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆13Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Variant call adjudication☆16Updated 7 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- Unfazed by genomic variant phasing☆26Updated 7 months ago
- Index and query k-mer matrices in BGZF☆12Updated 6 years ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- horizontal pileup☆16Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆20Updated 3 years ago
- Lossless VCF compression☆18Updated 2 years ago
- Benchmark structural variant calls against a reference set☆17Updated 2 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆32Updated last week
- The python binding for D4 format☆16Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 2 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 8 months ago
- Structural variant pipeline☆17Updated 4 years ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆16Updated this week
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- ☆19Updated 7 years ago