danielecook / seq-collection
☆13Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for seq-collection
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Updated 3 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆32Updated 4 years ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated last year
- Generate an enhanced VCF files from ClinVar XML Full releases☆13Updated last year
- Detects human contamination in bam files☆16Updated 4 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆50Updated 3 years ago
- horizontal pileup☆16Updated 2 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- v2.x of the microassembly based somatic variant caller☆14Updated 2 months ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- The python binding for D4 format☆16Updated 3 years ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 7 months ago
- Lossless VCF compression☆18Updated 2 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- Unfazed by genomic variant phasing☆26Updated 5 months ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Updated 2 years ago
- Variant call adjudication☆16Updated 5 months ago
- DNA kmer operations for nim☆14Updated 2 years ago
- useful command-line tools written to showcase hts-nim☆49Updated 4 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆16Updated this week
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 3 weeks ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last month
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated last year
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- Benchmark structural variant calls against a reference set☆17Updated 3 weeks ago
- Hemang Parikh☆11Updated 8 years ago