danielecook / seq-collectionLinks
☆15Updated 5 years ago
Alternatives and similar repositories for seq-collection
Users that are interested in seq-collection are comparing it to the libraries listed below
Sorting:
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated 2 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Updated 4 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 3 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Updated 5 years ago
- drunk on perbase pileups and lua expressions☆19Updated 3 weeks ago
- Detects human contamination in bam files☆16Updated 5 years ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆23Updated this week
- Generate an enhanced VCF files from ClinVar XML Full releases☆15Updated 2 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Structural variant pipeline☆17Updated 5 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Hidden Markov Model based Copy number caller☆20Updated this week
- horizontal pileup☆16Updated 3 years ago
- Lossless VCF compression☆21Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Variant call adjudication☆16Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- useful command-line tools written to showcase hts-nim☆50Updated 5 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last month
- ☆21Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 4 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- The python binding for D4 format☆16Updated 4 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 6 months ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Updated 6 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago