a-h-b / dadasnakeLinks
Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake
☆49Updated last year
Alternatives and similar repositories for dadasnake
Users that are interested in dadasnake are comparing it to the libraries listed below
Sorting:
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 9 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- ☆17Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- ☆56Updated last week
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- Speedy versions of phyloseq functions