a-h-b / dadasnakeLinks
Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake
☆49Updated last year
Alternatives and similar repositories for dadasnake
Users that are interested in dadasnake are comparing it to the libraries listed below
Sorting:
- BEAV: Bacterial Element Annotation reVamped☆68Updated 3 weeks ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆64Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 3 months ago
- ☆17Updated 2 years ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆66Updated 3 years ago
- ☆55Updated last week
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- GraftM - Rapid community profiles from metagenomes☆45Updated last year
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆46Updated last week
- Using ggtree to build phylogenetic trees☆49Updated 10 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆39Updated this week
- Speedy versions of phyloseq functions☆47Updated last year
- SHallow shOtGUN profiler☆53Updated 3 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated last month
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆70Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 5 years ago
- ☆53Updated 2 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- ☆75Updated this week