Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake
☆49Mar 6, 2024Updated 2 years ago
Alternatives and similar repositories for dadasnake
Users that are interested in dadasnake are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Speedy versions of phyloseq functions☆50Apr 21, 2024Updated 2 years ago
- Automated pipeline for amplicon sequence analysis☆10Nov 25, 2025Updated 10 months ago
- A very simple BLAST filtering pipeline☆20Mar 28, 2014Updated 12 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- Parser for Ghost Koala☆10Aug 23, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆88Feb 26, 2026Updated 7 months ago
- Code to run the shiny functions for the MASAME suite☆27Feb 4, 2020Updated 6 years ago
- Implementation of CoNet in R☆16Oct 16, 2019Updated 6 years ago
- Accurate sample inference from amplicon data with single nucleotide resolution☆556Jul 31, 2026Updated 2 months ago
- ☆22Sep 4, 2024Updated 2 years ago
- Factorize metagenotypes to infer strains and their abundances☆12Sep 29, 2024Updated 2 years ago
- Miscellaneous functions for metagenomic analysis.☆53May 14, 2026Updated 4 months ago
- strain-level analysis tools☆40Oct 21, 2024Updated last year
- Tools for visualising microbial community amplicon data☆74Nov 3, 2025Updated 11 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A manually curated database of human gut metabolic modules.☆19Jul 27, 2018Updated 8 years ago
- ☆65Oct 2, 2026Updated last week
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆68Oct 3, 2026Updated last week
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆76Dec 21, 2023Updated 2 years ago
- whole genome MLST analysis☆57Jun 17, 2026Updated 3 months ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆47Oct 6, 2026Updated last week
- Taxonomic Reconstruction and Analysis of NGS Amplicons - A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads…☆23Oct 7, 2026Updated last week
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆100Jul 12, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- DAS Tool☆176May 2, 2024Updated 2 years ago
- Pipeline to run qiime2 with snakemake☆17Apr 17, 2020Updated 6 years ago
- ☆20Jan 6, 2023Updated 3 years ago
- Deep learning library for biological sequences. Extension of Fastai and Pytorch.☆38Jul 17, 2026Updated 2 months ago
- gutSMASH☆60Oct 3, 2025Updated last year
- POC Nextflow pipeline to run Illumina DRAGEN software☆14Aug 15, 2025Updated last year
- Prediction of microbial interactions in complex communities☆14Aug 14, 2024Updated 2 years ago
- Profiler for metagenomics based on NGLess☆14Feb 22, 2024Updated 2 years ago
- Making whole bacterial genome sequencing data analysis easy☆116Apr 22, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 8 years ago
- Variational autoencoder for metagenomic binning☆333Apr 27, 2026Updated 5 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆175Oct 1, 2026Updated last week
- ☆15Jun 23, 2026Updated 3 months ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆274May 13, 2026Updated 5 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Aug 20, 2026Updated last month
- A robust, extensible metagenomics pipeline☆177Oct 5, 2026Updated last week