aomlomics / tourmalineLinks
Amplicon sequence processing workflow using QIIME 2 and Snakemake
☆46Updated 3 weeks ago
Alternatives and similar repositories for tourmaline
Users that are interested in tourmaline are comparing it to the libraries listed below
Sorting:
- ☆61Updated last month
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 7 months ago
- BEAV: Bacterial Element Annotation reVamped☆73Updated 4 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated last year
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆68Updated 3 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last week
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆34Updated 5 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆32Updated 8 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- ☆18Updated 3 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- ☆41Updated 4 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆41Updated 3 years ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆16Updated 7 months ago
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆45Updated last year
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆50Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- workflows for offline analysis of 16S rRNA Nanopore data☆16Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 months ago