aomlomics / tourmaline
Amplicon sequence processing workflow using QIIME 2 and Snakemake
☆43Updated this week
Related projects ⓘ
Alternatives and complementary repositories for tourmaline
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆52Updated 2 months ago
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆9Updated 3 years ago
- ☆20Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆23Updated 3 weeks ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- ☆50Updated 3 weeks ago
- ☆29Updated 8 months ago
- ☆45Updated 7 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆28Updated this week
- ☆24Updated 5 years ago
- ☆13Updated this week
- BEAV: Bacterial Element Annotation reVamped☆59Updated 3 weeks ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆30Updated 3 months ago
- A simple script to display stuff on a world map with R and ggplot☆17Updated last year
- ☆17Updated last year
- Automatic Assembly For The Fungi☆19Updated last year
- ☆17Updated 2 months ago
- Tools for extracting individual genomes from metagenomes☆17Updated 11 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆63Updated 11 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆47Updated 2 years ago
- ☆40Updated 3 months ago
- Working with the outputs of sourmash in R☆25Updated last year
- A set of R scripts for the analysis of microbial profiles☆40Updated 6 months ago
- ☆13Updated 6 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago