Amplicon sequence processing workflow using QIIME 2 and Snakemake
☆45Mar 16, 2026Updated 2 months ago
Alternatives and similar repositories for tourmaline
Users that are interested in tourmaline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 6 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@…☆45Jan 18, 2024Updated 2 years ago
- Workflow for qiime2 workshop☆15Apr 17, 2024Updated 2 years ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆250Updated this week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Genomic Biodiversity Interest Group☆20Jun 7, 2025Updated last year
- ☆12Apr 5, 2021Updated 5 years ago
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 9 years ago
- ☆15Oct 7, 2025Updated 8 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated 11 months ago
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆16Oct 9, 2024Updated last year
- Qiime2 snakemake pipeline☆20Dec 21, 2023Updated 2 years ago
- ☆36Nov 8, 2023Updated 2 years ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆19May 26, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆20Jul 26, 2024Updated last year
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 6 years ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆51May 18, 2026Updated 3 weeks ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Woltka: a versatile meta'omic data classifier☆80Sep 8, 2025Updated 9 months ago
- ☆23Apr 13, 2026Updated last month
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- Do microbiome analysis with dada2 and phyloseq object☆15Oct 9, 2024Updated last year
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆51Mar 6, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A complete pipeline for metagenomic analysis☆446May 11, 2026Updated 3 weeks ago
- Materials and presentation for the 2023 ISB Microbiome course.☆25Sep 25, 2024Updated last year
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 4 months ago
- ☆16Jun 2, 2021Updated 5 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆116Nov 20, 2023Updated 2 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆37Mar 24, 2026Updated 2 months ago
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago
- 16S pipeline using qiime2 created with snakemake