Alternatives and similar repositories for tourmaline

Users that are interested in tourmaline are comparing it to the libraries listed below

• snayfach / MicrobeCensus
  MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
  ☆46Updated 5 years ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆60Updated 9 months ago
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated last year
• WatsonLab / MAGpy
  Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
  ☆62Updated 2 years ago
• benjjneb / LRASManuscript
  Reproducible Analyses accompanying DADA2 + PacBio Manuscript
  ☆32Updated 4 years ago
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆24Updated 7 months ago
• statdivlab / radEmu
  ☆55Updated last month
• eead-csic-compbio / metagenome_Pfam_score
  Protocol for finding informative protein families and then using them to score metagenomic sets.
  ☆9Updated 3 years ago
• richardmleggett / MARTi
  Metagenomic Analysis in Real Time
  ☆24Updated 3 weeks ago
• Lagkouvardos / Rhea
  A set of R scripts for the analysis of microbial profiles
  ☆41Updated last year
• mahsa-mousavi / eDNAFlow
  ☆21Updated 2 years ago
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆21Updated last year
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆28Updated 4 months ago
• Arcadia-Science / sourmashconsumr
  Working with the outputs of sourmash in R
  ☆27Updated last year
• ErnakovichLab / dada2_ernakovichlab
  ☆16Updated this week
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆66Updated 7 months ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆47Updated last year
• merenlab / world-map-r
  A simple script to display stuff on a world map with R and ggplot
  ☆17Updated last year
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆67Updated last year
• jcmcnch / eASV-pipeline-for-515Y-926R
  This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
  ☆32Updated this week
• metagenopolis / CroCoDeEL
  CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
  ☆24Updated 2 weeks ago
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆26Updated 2 years ago
• ukaraoz / microtrait
  ☆39Updated last year
• a-h-b / dadasnake
  Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake
  ☆48Updated last year
• frederic-mahe / swarm
  A robust and fast clustering method for amplicon-based studies
  ☆31Updated 2 years ago
• jkzorz / SituSeq
  workflows for offline analysis of 16S rRNA Nanopore data
  ☆13Updated 2 years ago
• MadsAlbertsen / mmgenome
  Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes
  ☆27Updated 7 years ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆54Updated last week
• jlw-ecoevo / gRodon2
  ☆44Updated last week
• meglecz / mkCOInr
  Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options
  ☆15Updated last month