aomlomics / tourmalineLinks
Amplicon sequence processing workflow using QIIME 2 and Snakemake
☆46Updated last week
Alternatives and similar repositories for tourmaline
Users that are interested in tourmaline are comparing it to the libraries listed below
Sorting:
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆72Updated 4 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 6 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆41Updated 2 years ago
- Automatic Assembly For The Fungi☆25Updated 3 months ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆16Updated 7 months ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆68Updated 3 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆16Updated 2 years ago
- A visualization tool for exploratory data analysis of metagenomic data☆37Updated 3 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 5 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 3 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆38Updated 3 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago
- Plot microbiome time series in parallel☆27Updated 2 years ago
- ☆61Updated 2 weeks ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆45Updated last year
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- MAG Circularization Method☆32Updated last month