aomlomics / tourmalineView external linksLinks
Amplicon sequence processing workflow using QIIME 2 and Snakemake
☆45Dec 22, 2025Updated last month
Alternatives and similar repositories for tourmaline
Users that are interested in tourmaline are comparing it to the libraries listed below
Sorting:
- Pipeline to run qiime2 with snakemake☆16Apr 17, 2020Updated 5 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- ☆11Apr 5, 2021Updated 4 years ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆233Feb 6, 2026Updated last week
- ☆15Jun 2, 2021Updated 4 years ago
- Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@…☆45Jan 18, 2024Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Jun 14, 2025Updated 8 months ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆16May 26, 2025Updated 8 months ago
- Woltka: a versatile meta'omic data classifier☆76Sep 8, 2025Updated 5 months ago
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 8 years ago
- A QIIME 2 implementation of SMURF☆13Apr 27, 2022Updated 3 years ago
- ☆15Oct 7, 2025Updated 4 months ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Feb 3, 2020Updated 6 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆50Mar 6, 2024Updated last year
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆33Feb 2, 2026Updated last week
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆19Jul 26, 2024Updated last year
- Qiime2 snakemake pipeline☆20Dec 21, 2023Updated 2 years ago
- ☆19Dec 4, 2025Updated 2 months ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Dec 6, 2024Updated last year
- A phylogenetic profile analysis tool☆38Nov 18, 2025Updated 2 months ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆47Feb 3, 2026Updated last week
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆114Nov 20, 2023Updated 2 years ago
- ☆22Oct 9, 2025Updated 4 months ago
- This repository contains all CWL descriptions of the MGnify pipeline version 5.0.☆24Oct 3, 2025Updated 4 months ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Sep 25, 2024Updated last year
- 16S pipeline using qiime2 created with snakemake☆12Jan 2, 2026Updated last month
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- ☆10Feb 21, 2020Updated 5 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- A complete pipeline for metagenomic analysis☆440Jan 21, 2026Updated 3 weeks ago
- ☆22Nov 6, 2020Updated 5 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Nov 14, 2025Updated 3 months ago
- Statistical Analysis of Metagenomic Profiles☆94Jan 26, 2026Updated 2 weeks ago
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 3 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- ☆12Jun 12, 2019Updated 6 years ago