Amplicon sequence processing workflow using QIIME 2 and Snakemake
☆46Jul 27, 2026Updated last month
Alternatives and similar repositories for tourmaline
Users that are interested in tourmaline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 6 years ago
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@…☆48Jan 18, 2024Updated 2 years ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆259Aug 20, 2026Updated last week
- Genomic Biodiversity Interest Group☆20Jun 7, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Apr 5, 2021Updated 5 years ago
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆16Oct 9, 2024Updated last year
- ☆15Oct 7, 2025Updated 10 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated last year
- ☆37Nov 8, 2023Updated 2 years ago
- Qiime2 snakemake pipeline☆20Dec 21, 2023Updated 2 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆51Mar 6, 2024Updated 2 years ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆20Jul 26, 2024Updated 2 years ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆11Jul 28, 2019Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Woltka: a versatile meta'omic data classifier☆81Sep 8, 2025Updated 11 months ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- Do microbiome analysis with dada2 and phyloseq object☆15Oct 9, 2024Updated last year
- A complete pipeline for metagenomic analysis☆451Updated this week
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 7 months ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆20May 26, 2025Updated last year
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆13Mar 18, 2024Updated 2 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆117Nov 20, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Shotgun Metagenome Annotation Pipeline☆24Mar 24, 2017Updated 9 years ago
- ☆22Oct 9, 2025Updated 10 months ago
- scripts to parse IrysView output☆11Jun 24, 2015Updated 11 years ago
- ☆16Jun 2, 2021Updated 5 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆37Mar 24, 2026Updated 5 months ago
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 4 years ago
- Statistical Analysis of Metagenomic Profiles☆94Jul 2, 2026Updated last month
- A generalised, dynamic DNA reference library for metabarcoding of fishes☆19Aug 20, 2026Updated last week
- 16S pipeline using qiime2 created with snakemake☆12Aug 21, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Materials and presentation for the 2023 ISB Microbiome course.☆25Sep 25, 2024Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Feb 3, 2020Updated 6 years ago
- Bioinformatics Pipeline☆12Oct 7, 2022Updated 3 years ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆53May 18, 2026Updated 3 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆58Updated this week
- Python package for building and analyzing models using ModelSEED☆31Feb 11, 2026Updated 6 months ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆184Jul 17, 2026Updated last month