novoBreak: local assembly for breakpoint detection in cancer genomes
☆25May 2, 2018Updated 7 years ago
Alternatives and similar repositories for nb_distribution
Users that are interested in nb_distribution are comparing it to the libraries listed below
Sorting:
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Feb 16, 2026Updated 2 weeks ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 6 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Feb 23, 2023Updated 3 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 3 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Sep 12, 2024Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72May 23, 2024Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 5 years ago
- ☆76Jul 12, 2023Updated 2 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- Utility functions for FACETS☆39Oct 24, 2025Updated 4 months ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆114Oct 12, 2022Updated 3 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆20May 9, 2019Updated 6 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 4 years ago
- A method to identify structural variation from sequencing data in target regions☆32Sep 23, 2020Updated 5 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 6 years ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 2 years ago
- cfDNA analysis workflow☆23Jun 15, 2023Updated 2 years ago
- Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.☆57Jul 19, 2024Updated last year
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 7 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Feb 12, 2026Updated 2 weeks ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Sep 3, 2019Updated 6 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- A mosaic detecting software based on phasing and random forest☆70Dec 8, 2025Updated 2 months ago
- Deep learning-based structural variant filtering method☆39Nov 19, 2023Updated 2 years ago
- A bioinformatics tool for SV detection and virus integration discovery☆21Sep 12, 2017Updated 8 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago