czc / nb_distributionLinks
novoBreak: local assembly for breakpoint detection in cancer genomes
☆25Updated 7 years ago
Alternatives and similar repositories for nb_distribution
Users that are interested in nb_distribution are comparing it to the libraries listed below
Sorting:
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- ☆26Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- ☆51Updated 6 years ago
- Integrative analysis of structural variations.☆40Updated last year
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 2 months ago
- Adapters for trimming☆30Updated 6 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 3 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆51Updated 4 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated last week
- Immuological gene typing and annotation for genome assembly☆38Updated 7 months ago
- ☆35Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆18Updated 4 years ago
- Long read to rMATS☆32Updated 2 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- CADD-SV – a framework to score the effect of structural variants☆16Updated 7 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- R package for DNA methylation analysis☆19Updated last year
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- Telomerecat: The telomere computational analysis tool☆21Updated 4 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 7 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated 2 weeks ago