Alternatives and similar repositories for FinaleToolkit

Users that are interested in FinaleToolkit are comparing it to the libraries listed below

• hw538 / cfDNAPro
  cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
  ☆34Updated 3 weeks ago
• mskilab-org / dryclean
  Irons out wrinkles in noisy coverage data using robust PCA
  ☆15Updated 2 months ago
• christacaggiano / celfie
  cfDNA cell type of origin estimation
  ☆31Updated last year
• adoebley / Griffin
  A flexible framework for nucleosome profiling of cell-free DNA
  ☆27Updated last year
• WGLab / CancerVar
  Clinical interpretation of somatic mutations in cancer
  ☆47Updated 4 months ago
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆46Updated 3 months ago
• cancerit / alleleCount
  Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…
  ☆45Updated 2 years ago
• cancer-genomics / reproduce_lucas_wflow
  ☆30Updated last year
• jordanlab / tagore
  The script presents a simple way to visualize features on human chromosome ideograms
  ☆42Updated 2 months ago
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated 2 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆84Updated last month
• nloyfer / meth_atlas
  ☆49Updated 3 years ago
• pughlab / bamgineer
  Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets
  ☆38Updated 4 years ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated 5 months ago
• gagneurlab / absplice
  ☆39Updated 2 weeks ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated last year
• dariober / cnv_facets
  Somatic copy variant caller (CNV) for next generation sequencing
  ☆73Updated 10 months ago
• VanLoo-lab / ASCAT.sc
  ☆21Updated last month
• icbi-lab / nextNEOpi
  nextNEOpi: a comprehensive pipeline for computational neoantigen prediction
  ☆75Updated last month
• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆50Updated 6 years ago
• WGLab / VirTect
  Detection of viruses from RNA-Seq on human samples
  ☆45Updated 2 years ago
• aeeckhou / shallowHRD
  This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …
  ☆34Updated last year
• bioinfo-pf-curie / TMB
  Tumor Mutational Burden
  ☆61Updated 10 months ago
• hartwigmedical / pipeline5
  ☆21Updated last week
• gatk-workflows / gatk4-rnaseq-germline-snps-indels
  Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
  ☆77Updated 3 years ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆62Updated 2 months ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆93Updated last month
• ccagc / QDNAseq
  QDNAseq package for Bioconductor
  ☆50Updated 11 months ago
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated 2 years ago