Alternatives and similar repositories for flipbook

Users that are interested in flipbook are comparing it to the libraries listed below

• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆36Updated 5 months ago
• HTGenomeAnalysisUnit / SCE-VCF
  Sample Contamination Estimate from VCF
  ☆21Updated 11 months ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆38Updated last year
• PacificBiosciences / TRexs
  TRGT Repeat expansion summary
  ☆10Updated 2 years ago
• kcleal / SV_Benchmark_CMRG_GIAB
  Structural variant benchmark
  ☆18Updated 7 months ago
• 0xTCG / haptreex
  Haplotype phaser for next-generation sequencing data
  ☆13Updated 3 years ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆33Updated 2 years ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆46Updated last month
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 8 months ago
• PacificBiosciences / pbfusion
  ☆23Updated 4 months ago
• ptrebert / project-diploid-assembly
  Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
  ☆16Updated last year
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆28Updated 11 months ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆35Updated 8 years ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 6 months ago
• Platinum-Pedigree-Consortium / Platinum-Pedigree-Datasets
  ☆35Updated 8 months ago
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆22Updated 11 months ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆28Updated 4 years ago
• lh3 / panmask
  Easy genomic regions for short-read variant calling
  ☆44Updated last month
• vgteam / libbdsg
  Optimized sequence graph implementations for graph genomics
  ☆34Updated last week
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆32Updated last week
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆31Updated 2 months ago
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆58Updated 3 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆39Updated 2 months ago
• benedictpaten / marginPhase
  ☆34Updated 5 years ago
• andrewSharo / StrVCTVRE
  StrVCTVRE, a structural variant classifier for exonic deletions and duplications
  ☆19Updated last year
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated 6 months ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 10 months ago
• ChaissonLab / vamos
  VNTR annotation using motif selection
  ☆38Updated last month
• hitbc / gcSV
  ☆21Updated 7 months ago