kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
☆23Aug 23, 2023Updated 2 years ago
Alternatives and similar repositories for kASA
Users that are interested in kASA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆105Apr 23, 2026Updated last week
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 5 years ago
- ☆16Jun 2, 2021Updated 4 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆12May 5, 2024Updated last year
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Lightweight resources assembly algorithm☆19May 17, 2017Updated 8 years ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13May 12, 2022Updated 3 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆104Sep 17, 2022Updated 3 years ago
- Long-read metagenomic analysis☆111Oct 10, 2023Updated 2 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Mar 20, 2026Updated last month
- ☆15Mar 10, 2026Updated last month
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Mar 19, 2026Updated last month
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 5 months ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆50Apr 24, 2026Updated last week
- Fast and scalable nanopore adaptive sampling☆35Jun 6, 2023Updated 2 years ago
- GenePiper☆12Mar 13, 2022Updated 4 years ago
- Microbiome classification pipeline☆67May 13, 2025Updated 11 months ago
- Generate basic stats for an assembly.☆13Feb 12, 2023Updated 3 years ago
- Species Level Identification of Microbes from Metagenomes☆27Apr 30, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Apr 9, 2024Updated 2 years ago
- ☆83Apr 10, 2026Updated 3 weeks ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 5 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Jul 2, 2022Updated 3 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆67Jun 7, 2023Updated 2 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago
- Multiplex PCR design, in silico☆20Mar 4, 2025Updated last year
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pan-Genomic Matching Statistics☆56Apr 3, 2024Updated 2 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆11Updated this week
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago