zhangzhen / spritesLinks
A deletion finder through re-aligning the whole soft-clipping read
☆12Updated 9 years ago
Alternatives and similar repositories for sprites
Users that are interested in sprites are comparing it to the libraries listed below
Sorting:
- Structural variant pipeline☆17Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Updated 2 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆10Updated this week
- ☆23Updated 2 months ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Updated 3 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated last month
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 7 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 4 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Updated 4 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 6 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year