Workflow: Convert CONTROL-freec output to GISTIC2
☆10Apr 20, 2021Updated 5 years ago
Alternatives and similar repositories for freec2gistic
Users that are interested in freec2gistic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Apr 13, 2021Updated 5 years ago
- Calls somatic SNVs, indels, and allelic copy number jointly across multiple samples from the same patient. These can be standard tumor/n…☆10Oct 29, 2020Updated 6 years ago
- ☆11Aug 30, 2021Updated 5 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆17Oct 15, 2026Updated 2 weeks ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆24Jul 24, 2023Updated 3 years ago
- ☆11Oct 7, 2025Updated last year
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆20Feb 22, 2022Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆25Oct 6, 2020Updated 6 years ago
- Nextflow pipeline to convert VCF files into MAF files.☆10Dec 12, 2025Updated 10 months ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆39Nov 14, 2021Updated 4 years ago
- Find CNVs in single cell sequencing data.☆22Apr 4, 2026Updated 6 months ago
- Nextflow wrapper built around nf-core/modules☆12Nov 25, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆17Dec 10, 2019Updated 6 years ago
- Reference data: BED files, genes, transcripts, variations.☆90Nov 28, 2017Updated 8 years ago
- Utilities repository to analyze single-cell data from https://www.nature.com/articles/s41467-018-07261-3.☆10Feb 7, 2020Updated 6 years ago
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆29Jul 31, 2022Updated 4 years ago
- ☆16Aug 10, 2026Updated 2 months ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 5 years ago
- A Python library for manipulation of CIGAR, MSA, and other alignment formats.☆12Apr 14, 2026Updated 6 months ago
- ESTIMATE tumor infiltration, the tidy way☆19Aug 22, 2023Updated 3 years ago
- seqpac - A Framework for small RNA analysis in R using Sequence-Based Counts☆10Oct 12, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 7 years ago
- An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The…☆15Jan 29, 2026Updated 9 months ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- Repository for reproducing figures and tables for the study titled, "Mapping spatial organization and genetic cell state regulators to ta…☆10Sep 5, 2024Updated 2 years ago
- ☆19Oct 24, 2023Updated 3 years ago
- Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models☆23Oct 22, 2018Updated 8 years ago
- Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files☆118Aug 30, 2021Updated 5 years ago
- Motif Enrichment In Ranked Lists Of Peaks☆10Jun 17, 2021Updated 5 years ago
- call copy number from WES(WXS)☆12May 10, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Analysis pipelines for cancer genome sequencing in mice.☆23Jun 19, 2026Updated 4 months ago
- ☆11May 6, 2021Updated 5 years ago
- ☆11May 21, 2024Updated 2 years ago
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 6 months ago
- Tumor genotyper, that detects SNV, absolute CNV and Tumor contents☆10Jul 18, 2023Updated 3 years ago
- Convert MSP files into a database☆10May 4, 2021Updated 5 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆11Oct 13, 2026Updated 2 weeks ago