kunstner / freec2gisticLinks
Workflow: Convert CONTROL-freec output to GISTIC2
☆10Updated 4 years ago
Alternatives and similar repositories for freec2gistic
Users that are interested in freec2gistic are comparing it to the libraries listed below
Sorting:
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated last year
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Workflow for Sequenza, cellularity and ploidy☆20Updated 2 weeks ago
- DriverPower☆26Updated 7 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆61Updated 8 months ago
- Filters for false-positive mutation calls in NGS☆32Updated 6 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- ☆25Updated last year
- ☆38Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆22Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆37Updated last year
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆52Updated 3 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆39Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated last year
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- ☆31Updated 8 months ago
- Long read to rMATS☆32Updated 2 years ago
- BISulfite-seq CUI Toolkit☆24Updated 3 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Updated 5 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Python package to annotate and visualize gene fusions.☆64Updated 11 months ago