kunstner / freec2gisticLinks
Workflow: Convert CONTROL-freec output to GISTIC2
☆10Updated 4 years ago
Alternatives and similar repositories for freec2gistic
Users that are interested in freec2gistic are comparing it to the libraries listed below
Sorting:
- Workflow for Sequenza, cellularity and ploidy☆26Updated 5 months ago
- DriverPower☆26Updated last year
- Python package to annotate and visualize gene fusions.☆65Updated last year
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated 3 weeks ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 2 months ago
- ☆18Updated 4 years ago
- workshop website on readthedocs☆21Updated 4 months ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Updated 8 years ago
- ☆23Updated 4 years ago
- ☆12Updated 2 years ago
- ☆34Updated 2 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Updated 2 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Updated 6 years ago
- ☆39Updated 4 years ago
- Codes and Data for FFPEsig manuscript☆17Updated 2 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- ☆35Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Long read to rMATS☆32Updated 2 years ago
- R package wrapping bedtools☆44Updated 10 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- ☆23Updated 2 months ago
- Repository for the Anczukow-Lab splicing pipeline☆17Updated 10 months ago
- Website for the precision medicine workshop☆46Updated 2 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago