iqbal-lab-org / minos
Variant call adjudication
☆16Updated 7 months ago
Alternatives and similar repositories for minos:
Users that are interested in minos are comparing it to the libraries listed below
- Hidden Markov Model based Copy number caller☆20Updated 2 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Benchmark structural variant calls against a reference set☆17Updated 2 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆11Updated last month
- ☆32Updated 2 years ago
- Variant call verification☆15Updated this week
- ☆12Updated 3 years ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 2 years ago
- ☆13Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 9 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- ☆9Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 8 months ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- transposable element typing pipeline☆17Updated 10 months ago
- Align subreads to ccs reads☆13Updated last year
- Importing vg json graphs to Python data structures.☆10Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Benchmarking variant calling in polyploids☆13Updated 3 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- A long-read analysis toolbox for cancer and population genomics☆21Updated 10 months ago
- Simulate mutations in genomes☆15Updated 4 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 2 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago