iqbal-lab-org / minos
Variant call adjudication
☆16Updated 3 months ago
Related projects: ⓘ
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- Variant call verification☆14Updated last year
- ☆12Updated 3 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆11Updated last month
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated 10 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated 9 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 2 years ago
- Simulate mutations in genomes☆13Updated 4 years ago
- Benchmark structural variant calls against a reference set☆16Updated 3 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆31Updated last year
- ☆13Updated last year
- Kmer based genotyper for short reads.☆23Updated 2 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆12Updated 5 years ago
- Benchmarking variant calling in polyploids☆13Updated 2 years ago
- ☆9Updated 2 years ago
- A long-read analysis toolbox for cancer and population genomics☆19Updated 6 months ago
- transposable element typing pipeline☆15Updated 6 months ago
- software to identify primers that can distinguish genomes☆14Updated this week
- Importing vg json graphs to Python data structures.☆10Updated 3 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- maze: match visualizer☆9Updated 2 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆21Updated last month
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 2 years ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 2 years ago
- ☆22Updated 2 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- ☆31Updated last year
- Split a BAM file by haplotype support☆16Updated 6 years ago