myriad-opensource / samwellLinks
Samwell: a python package for using genomic files... well
☆20Updated 3 years ago
Alternatives and similar repositories for samwell
Users that are interested in samwell are comparing it to the libraries listed below
Sorting:
- Sample Contamination Estimate from VCF☆19Updated 8 months ago
- Structural variant (SV) analysis tools☆36Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Updated 4 months ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- ☆16Updated 6 months ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- Fast sequencing data quality metrics☆26Updated last month
- Quality of life improvements for Bioinformatics in Python.☆30Updated this week
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated last month
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Human mitochondrial variants annotation using HmtVar.☆18Updated last year
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- ☆23Updated last month
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Lossless VCF compression☆18Updated 3 years ago
- Structural variant pipeline☆17Updated 5 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated 3 weeks ago