myriad-opensource / samwellLinks
Samwell: a python package for using genomic files... well
☆20Updated 2 years ago
Alternatives and similar repositories for samwell
Users that are interested in samwell are comparing it to the libraries listed below
Sorting:
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- Sample Contamination Estimate from VCF☆19Updated 7 months ago
- Population-wide Deletion Calling☆35Updated last month
- Location of public benchmarking; primarily final results☆18Updated 3 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Quality of life improvements for Bioinformatics in Python.☆29Updated this week
- ☆16Updated 4 months ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- Fast sequencing data quality metrics☆26Updated this week
- ☆12Updated 3 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- Unfazed by genomic variant phasing☆26Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- ☆14Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Structural variant pipeline☆17Updated 4 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆23Updated 9 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated this week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago