Samwell: a python package for using genomic files... well
☆20Jun 28, 2022Updated 4 years ago
Alternatives and similar repositories for samwell
Users that are interested in samwell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quality of life improvements for Bioinformatics in Python.☆35Jul 29, 2026Updated last week
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- ☆11Mar 4, 2025Updated last year
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 3 weeks ago
- ☆11Dec 9, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 5 months ago
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- Generate beautiful API documentation for Nextflow pipelines☆18Updated this week
- Grep for FASTQ files☆104Jul 9, 2026Updated last month
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆21Mar 27, 2026Updated 4 months ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Structural Variant Index☆76Jul 1, 2026Updated last month
- ☆11Sep 7, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 7 months ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 5 years ago
- Lossless VCF compression☆22Mar 4, 2022Updated 4 years ago
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 3 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Jul 30, 2020Updated 6 years ago
- SQL-like query language for the SAM/BAM file format☆30Sep 20, 2023Updated 2 years ago
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Jul 23, 2026Updated 2 weeks ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Python Primer Design Library☆15Mar 27, 2026Updated 4 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆22Jul 23, 2026Updated 2 weeks ago
- Kmer Analysis of Pileups for Genotyping☆40Jul 16, 2026Updated 3 weeks ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Structural Variant Prediction Viewer☆35Jul 19, 2017Updated 9 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tools for fiberseq data written in rust.☆69Jul 21, 2026Updated 2 weeks ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- ☆11Jul 13, 2018Updated 8 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated last year
- Genomics Extension for SQLite☆169Sep 3, 2024Updated last year
- DolphinNext Tutorial documents☆16Jul 5, 2021Updated 5 years ago