Alternatives and similar repositories for stCancer

Users that are interested in stCancer are comparing it to the libraries listed below

• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago
• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆17Updated 3 years ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 3 years ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆49Updated 5 months ago
• Lan-lab / sc-GC
  ☆31Updated 3 years ago
• Chuxj / CRC-atlas
  ☆32Updated last year
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆43Updated 2 years ago
• lfranzen / spatial-lung-fibrosis
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆29Updated last year
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆41Updated last year
• aliceygao / pan-Fibroblast
  ☆53Updated last year
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆27Updated 3 years ago
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆20Updated last year
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆29Updated 4 years ago
• Junjie-Hu / NSCLC-immunotherapy
  ☆28Updated last year
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆71Updated 3 years ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆32Updated 9 months ago
• QiangShiPKU / CoVarNet
  ☆49Updated 4 months ago
• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated 9 months ago
• PansccSpat / SpatialMapESCC
  ☆22Updated last year
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆53Updated 11 months ago
• SiyuanHuang1 / cpplot
  Visualize the results of cell-cell communication analysis
  ☆24Updated 2 years ago
• guangchunhan / LUAD_Code
  ☆24Updated 2 years ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆30Updated last month
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆38Updated 4 years ago
• ThomasJamesMitchell / deSCeRNAMut
  Method for de novo mutation calling from droplet based single cell RNA seq data
  ☆14Updated 4 years ago
• czythu / scCancer
  <Bioinformatics> scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution
  ☆27Updated 3 months ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆26Updated 9 months ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆60Updated this week