Alternatives and similar repositories for stCancer

Users that are interested in stCancer are comparing it to the libraries listed below

• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 2 years ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆46Updated 3 weeks ago
• Junjie-Hu / NSCLC-immunotherapy
  ☆24Updated last year
• Lan-lab / sc-GC
  ☆31Updated 2 years ago
• youqiongye / CRC_scRNAseq
  ☆46Updated 3 years ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆30Updated 4 months ago
• Chuxj / CRC-atlas
  ☆27Updated last year
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆42Updated 2 years ago
• liziyie / Onco-fetal-CAF-in-HCC
  ☆20Updated last year
• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆17Updated 3 years ago
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆26Updated 4 months ago
• bio-Pixel / panVC
  ☆50Updated last year
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆38Updated last year
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆67Updated 2 years ago
• ThomasJamesMitchell / deSCeRNAMut
  Method for de novo mutation calling from droplet based single cell RNA seq data
  ☆14Updated 3 years ago
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆48Updated 6 months ago
• ma-jq / B
  ☆25Updated last year
• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated 4 months ago
• PansccSpat / SpatialMapESCC
  ☆17Updated 8 months ago
• maximemeylan / Meylan_et_al_2022
  ☆19Updated 3 years ago
• czythu / scCancer
  scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution
  ☆27Updated 6 months ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆53Updated last month
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆27Updated 5 months ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago
• yqq-chen / CRC_ICB
  ☆31Updated last year
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆22Updated 3 years ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆18Updated last year
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆46Updated 3 months ago
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆51Updated 3 years ago