Alternatives and similar repositories for bioCancer

Users that are interested in bioCancer are comparing it to the libraries listed below

• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆43Updated this week
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆31Updated 6 months ago
• omicsCore / SEQprocess
  SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
  ☆17Updated 5 years ago
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated last week
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• RTCGA / RTCGA
  Download, integration and visualizations of the variety & volume of TCGA data.
  ☆51Updated 3 years ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• stemangiola / bioc_2020_tidytranscriptomics
  Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
  ☆26Updated 5 years ago
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated 11 months ago
• stephenturner / msigdf
  Molecular Signatures Database (MSigDB) in a data frame
  ☆16Updated 6 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago
• tidyomics / tidyomicsBlog_ARCHIVE
  The blog of tidyomics
  ☆14Updated 4 months ago
• KatrionaGoldmann / volcano3D
  An R package to plot interactive three-way differential expression analysis
  ☆38Updated 2 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆23Updated last month
• lgeistlinger / EnrichmentBrowser
  Seamless navigation through combined results of set-based and network-based enrichment analysis
  ☆21Updated 2 months ago
• cmap / morpheus.R
  R interface to morpheus.js heatmap widget
  ☆39Updated 5 years ago
• karissawhiting / cbioportalR
  R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
  ☆23Updated 11 months ago
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆72Updated last week
• lcolladotor / biocthis
  Automate package and project setup for Bioconductor packages
  ☆54Updated 8 months ago
• liuhong-jia / scAnno
  ☆25Updated 5 months ago
• cBioPortal / cgdsr
  R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
  ☆25Updated 4 years ago
• CRI-iAtlas / shiny-iatlas
  An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app
  ☆49Updated 4 years ago
• waldronlab / ProjectAsPackage
  Demonstration of the use of an R package to organize a data analysis project
  ☆22Updated 5 years ago
• Bioconductor / BioC2020
  BioC2020: Where Software and Biology Connect
  ☆12Updated 2 years ago
• yan-cri / DEApp
  DEAPP shiny App
  ☆30Updated 3 years ago
• carpentries-incubator / bioc-rnaseq
  Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
  ☆25Updated this week
• Bioconductor / BiocParallel
  Bioconductor facilities for parallel evaluation
  ☆68Updated 3 weeks ago
• fperraudeau / bioc2017singlecell
  Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…
  ☆11Updated 8 years ago
• biodatascience / compbio
  Introduction to Computational Biology
  ☆32Updated last year
• seandavi / wdlRunR
  Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
  ☆34Updated 4 years ago