kmezhoud / bioCancerLinks
A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis
☆21Updated last year
Alternatives and similar repositories for bioCancer
Users that are interested in bioCancer are comparing it to the libraries listed below
Sorting:
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 6 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 7 years ago
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆22Updated 7 months ago
- NGS workflow templates and sample data☆9Updated last month
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- GEO RNA-seq Experiments Processing Pipeline☆21Updated 5 years ago
- R package for plotting 3D graphical visualization of multi-omics data.☆22Updated 3 years ago
- Dimensionality reduction and batch integration methods for single cell data☆16Updated 2 years ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated last month
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- ☆24Updated 3 weeks ago
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 6 years ago
- Source code for ScanGEO Shiny App☆15Updated 3 years ago
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Updated 4 years ago
- DEAPP shiny App☆30Updated 3 years ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 5 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆22Updated this week
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆21Updated last year
- An R Interface to the ImmuneSpace database portal☆24Updated last year
- R package for benchmarking single cell analysis methods☆31Updated last year
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆23Updated 4 years ago
- Toolbox package for organizing and working with TCGA data☆28Updated 2 weeks ago
- Core utilities for single-cell RNA-seq☆12Updated 2 months ago
- Gene-level general linear mixed model☆22Updated 5 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago