A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis
☆22Feb 14, 2024Updated 2 years ago
Alternatives and similar repositories for bioCancer
Users that are interested in bioCancer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- single cell and bulk RNASeq analysis scripts☆13Jan 13, 2022Updated 4 years ago
- Source code and data for "Pan-cancer analysis of bi-allelic alterations in homologous recombination (HR) DNA repair genes" ; See manuscri…☆13May 26, 2017Updated 9 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- tugHall: a simulator of cancer cell evolution based on the hallmarks of cancer, linked to the mutational states of tumor-related genes. T…☆13Dec 11, 2023Updated 2 years ago
- R package for plotting 3D graphical visualization of multi-omics data.☆27Mar 16, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆23May 4, 2026Updated 5 months ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆21Jan 22, 2026Updated 9 months ago
- ☆10Nov 5, 2023Updated 2 years ago
- A pipeline to generate a Deep Nerual Network cell type deconvolution model for bulk RNASeq samples from single cell experiment data☆12Nov 17, 2020Updated 5 years ago
- Explore the cancer relevance of your gene list☆55Aug 11, 2026Updated 2 months ago
- [source] CELLO - Cancer EvoLution toolbox for LOngitudinal data☆17Aug 24, 2020Updated 6 years ago
- mitochondrial variant analysis tools☆15Mar 4, 2021Updated 5 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆18Jan 15, 2020Updated 6 years ago
- ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnr…☆17Feb 2, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆12Aug 13, 2020Updated 6 years ago
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated last year
- Slides for my RLadies NYC Presentation☆11Feb 27, 2020Updated 6 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵☆28Updated this week
- An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)☆10Oct 25, 2021Updated 5 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 6 years ago
- Toolbox package for organizing and working with TCGA data☆31Jul 2, 2026Updated 4 months ago
- Generate signature matrix from single cell data.☆12Apr 13, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆15Sep 21, 2021Updated 5 years ago
- scID☆14Oct 21, 2021Updated 5 years ago
- CGM 主站☆11Jun 8, 2026Updated 4 months ago
- Differential analysis of multi-omics data based on the Tweedie distribution☆33Sep 28, 2026Updated last month
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Mar 31, 2026Updated 7 months ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- Cell signatures, with confidence.☆10Jun 1, 2020Updated 6 years ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆27Apr 4, 2023Updated 3 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆89Oct 4, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆11Mar 11, 2018Updated 8 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆22Jan 17, 2023Updated 3 years ago
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- R/Bioconductor package for optimized functional annotation of ChIP-seq data☆10May 15, 2019Updated 7 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- SCREW: A Reproducible Workflow for Single-Cell Epigenomics☆11Oct 22, 2017Updated 9 years ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago