cmutd/TCGA_GTEx external links

---

GitHub - View repository

GitHub.dev - Open in online code editor

Star history - Growth chart over time

deps.dev - Dependencies and security vulnerabilities

Gitingest - Export source code for LLM usage

Repomix - Export source code for LLM usage

uithub - Export source code for LLM usage

Close

cmutd/TCGA_GTEx

Readme badge preview -

If you own this repo, copy the snippet below and add it to your README.md

---

Copy

[![RelatedRepos](https://img.shields.io/badge/related-repos-yellow)](https://relatedrepos.com/gh/cmutd/TCGA_GTEx)

Close

cmutd / TCGA_GTExView on GitHubMore

• External links
• Readme badge

☆15Nov 2, 2020Updated 5 years ago

Alternatives and similar repositories for TCGA_GTEx

Users that are interested in TCGA_GTEx are comparing it to the libraries listed below

• Coolgenome / GastricCancer

  View on GitHub
  ☆12Mar 5, 2024Updated last year
• WangJin93 / PCAS

  View on GitHub
  The ProteoCancer Analysis Suite (PCAS) utilizes the CPTAC database to integrate proteomics, phosphoproteomics, and transcriptomics for ca…
  ☆21Jun 18, 2025Updated 8 months ago
• DaXuanGarden / DXMeSH

  View on GitHub
  ☆10Mar 17, 2024Updated last year
• fswfsw / ScRNA-smartseq2

  View on GitHub
  单细胞转录组实战
  ☆14Jul 9, 2019Updated 6 years ago
• shijianasdf / UsualRcode

  View on GitHub
  bioinformatics R test code
  ☆14Feb 1, 2026Updated last month
• KaiAragaki / tidyestimate

  View on GitHub
  ESTIMATE tumor infiltration, the tidy way
  ☆17Aug 22, 2023Updated 2 years ago
• jmzeng1314 / GSE76275-TNBC

  View on GitHub
  ☆17Sep 9, 2020Updated 5 years ago
• pablo-gar / somatic_mutations_GTEx

  View on GitHub
  Methods and analysis for Garcia-Nieto, et al. Somatic mutations
  ☆17Jan 5, 2020Updated 6 years ago
• tjhwangxiong / TCGAplot

  View on GitHub
  A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME,…
  ☆125Mar 28, 2025Updated 11 months ago
• cystone / CNSSingleCellR

  View on GitHub
  对单细胞测序的学习，跟着流程走‘CNS图表复现’走
  ☆39Apr 2, 2021Updated 4 years ago
• dengchunyu / TIP

  View on GitHub
  The source code of web server TIP, including example data.
  ☆21Mar 28, 2019Updated 6 years ago
• crazyhottommy / Machine_learning_drug_discovery

  View on GitHub
  ☆28Apr 5, 2025Updated 10 months ago
• jinseob2kim / jstable

  View on GitHub
  Regression Tables from 'GLM', 'GEE', 'GLMM', 'Cox' and 'survey' Results.
  ☆32Feb 24, 2026Updated last week
• Zaoqu-Liu / MOFS

  View on GitHub
  Multimodality Fusion Subtyping (Nature Communications)
  ☆30Apr 21, 2025Updated 10 months ago
• lfranzen / spatial-lung-fibrosis

  View on GitHub
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆31Jul 13, 2024Updated last year
• WangLabCSU / faers

  View on GitHub
  R interface for FDA Adverse Event Reporting System
  ☆41Dec 23, 2025Updated 2 months ago
• junjunlab / tackPlotR

  View on GitHub
  An R package to visualize bigwigs.
  ☆32Jul 5, 2022Updated 3 years ago
• fusarolimichele / DiAna_package

  View on GitHub
  ☆11Dec 15, 2025Updated 2 months ago
• chensujun / scRNA

  View on GitHub
  ☆33Jul 17, 2021Updated 4 years ago
• jmzeng1314 / biotrainee

  View on GitHub
  ☆37Jan 1, 2019Updated 7 years ago
• jmzeng1314 / cnv

  View on GitHub
  ☆32Dec 6, 2017Updated 8 years ago
• ZhaotongL / cisMRcML

  View on GitHub
  ☆14Jun 24, 2024Updated last year
• Fanyi177 / Effects-of-Diets-on-Risks-of-Cancer-and-the-Mediating-role-of-Metabolites

  View on GitHub
  Effects of Adherence to Mediterranean and MIND Diets, and the Mediating Effect of Metabolites on Risks of Overall and 22 Specific Cancers…
  ☆13Apr 10, 2024Updated last year
• xjsun1221 / RSEM_with_limma_edgeR_Deseq2

  View on GitHub
  ☆37Jul 8, 2020Updated 5 years ago
• YuLab-SMU / tigeR

  View on GitHub
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆54Jan 21, 2026Updated last month
• ayueme / R_bioinformatics

  View on GitHub
  📄文档：医学和生信笔记公众号“生信数据挖掘”合集
  ☆58Nov 29, 2023Updated 2 years ago
• marswh12312313 / GeneSumCrawler

  View on GitHub
  Python-based web scraper for extracting gene summaries from GeneCards.
  ☆11Oct 3, 2024Updated last year
• woolf-wu / GEO

  View on GitHub
  ☆13Mar 17, 2019Updated 6 years ago
• casecpb / KSEA

  View on GitHub
  Kinase-Substrate Enrichment Analysis (KSEA) App
  ☆10May 2, 2017Updated 8 years ago
• Michorlab / tnbc_scrnaseq

  View on GitHub
  ☆42Oct 12, 2018Updated 7 years ago
• mwsill / IlluminaHumanMethylationEPICv2manifest

  View on GitHub
  ☆10Mar 7, 2023Updated 2 years ago
• renjunxiang / R-learning

  View on GitHub
  R语言自学笔记
  ☆14Jan 13, 2018Updated 8 years ago
• Teichlab / thymus_spatial_atlas

  View on GitHub
  general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!
  ☆12Nov 20, 2024Updated last year
• jokergoo / IlluminaHumanMethylationEPICv2anno.20a1.hg38

  View on GitHub
  ☆14Mar 26, 2024Updated last year
• waldronlab / curatedOvarianData

  View on GitHub
  The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer
  ☆11Oct 30, 2025Updated 4 months ago
• hellosunking / Msuite2

  View on GitHub
  Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance
  ☆10Jan 21, 2025Updated last year
• hzyao / merge_TCGA_GTEx

  View on GitHub
  ☆13Aug 11, 2023Updated 2 years ago
• CCCKW / mHapTk

  View on GitHub
  ☆10Jul 13, 2022Updated 3 years ago
• gerstung-lab / MDS-expression

  View on GitHub
  R code for Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes
  ☆13Mar 23, 2016Updated 9 years ago