tiroshlab / 3ca
Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
☆82Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for 3ca
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆59Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆46Updated last year
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆32Updated 3 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆62Updated 3 months ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆40Updated 3 years ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆75Updated 3 weeks ago
- scGSVA: Perform GSVA for single cell RNA seq☆48Updated 2 weeks ago
- ☆58Updated 5 years ago
- ☆27Updated 2 years ago
- Code repository for single cell RNA-seq☆32Updated 4 years ago
- A R package for advanced single cell data viz☆59Updated last year
- ☆42Updated 2 years ago
- Codes used in pan-T cell analysis☆49Updated last year
- ☆95Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆91Updated 11 months ago
- Single Cell Analysis Operations☆13Updated 8 months ago
- Construct Tumor Transition Zone Microenvironment☆35Updated this week
- ☆59Updated 4 years ago
- The integration of single cell rank-based gene set enrichment analysis☆112Updated 4 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 2 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆53Updated 3 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆34Updated 9 months ago
- ☆46Updated 2 months ago
- Senescent Cell Identification☆29Updated 9 months ago
- Mollecular Functional Portraits☆36Updated 7 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆89Updated 11 months ago
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆36Updated 2 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- ☆59Updated 2 years ago