Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
☆140Sep 6, 2024Updated 2 years ago
Alternatives and similar repositories for 3ca
Users that are interested in 3ca are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆60Jan 6, 2025Updated last year
- Methods to discover gene programs on single-cell data☆212Oct 12, 2026Updated 2 weeks ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Aug 17, 2022Updated 4 years ago
- ☆62Dec 27, 2023Updated 2 years ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆482Apr 11, 2026Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆253May 11, 2026Updated 5 months ago
- Scissor package☆279May 10, 2024Updated 2 years ago
- ☆30Jan 15, 2024Updated 2 years ago
- Codes used in pan-T cell analysis☆69Mar 13, 2023Updated 3 years ago
- ☆14Jun 11, 2023Updated 3 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆59Jan 12, 2024Updated 2 years ago
- ☆22Mar 6, 2023Updated 3 years ago
- These are scripts for pan-cacner NK cells analyses.☆76Aug 18, 2023Updated 3 years ago
- Codes for the scPLC project☆73Dec 2, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scRNA-seq analysis of EENT-ONB☆22Jan 14, 2024Updated 2 years ago
- ☆62Aug 8, 2024Updated 2 years ago
- ☆115Sep 16, 2020Updated 6 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆127Apr 26, 2025Updated last year
- ☆18Sep 13, 2023Updated 3 years ago
- R code used to analyze single cell PDAC data☆43Jun 29, 2024Updated 2 years ago
- The integration of single cell rank-based gene set enrichment analysis☆158Jan 14, 2026Updated 9 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆102Dec 8, 2022Updated 3 years ago
- ☆33Feb 26, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14Jun 6, 2024Updated 2 years ago
- ☆29Aug 24, 2023Updated 3 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆297Jul 23, 2026Updated 3 months ago
- ☆60Feb 23, 2024Updated 2 years ago
- ☆15Jan 24, 2024Updated 2 years ago
- Inferring CNV from Single-Cell RNA-Seq☆686Updated this week
- Repository for codes for the HBCA paper☆44Mar 17, 2023Updated 3 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆270Jul 8, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆683Mar 11, 2026Updated 7 months ago
- ☆136Aug 23, 2026Updated 2 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆122Jun 9, 2025Updated last year
- ☆314Jun 16, 2026Updated 4 months ago
- ☆18Mar 27, 2023Updated 3 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆66Dec 7, 2022Updated 3 years ago
- Quantifying metabolism activity at the single-cell resolution☆201Aug 20, 2026Updated 2 months ago