nghiavtr / SCmutLinks
☆33Updated 6 years ago
Alternatives and similar repositories for SCmut
Users that are interested in SCmut are comparing it to the libraries listed below
Sorting:
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ☆49Updated last year
- scRNA-seq cell type identification☆43Updated 5 years ago
- scWGCNA☆61Updated 2 years ago
- ☆32Updated 6 months ago
- ☆34Updated 6 years ago
- ☆18Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆53Updated 4 years ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- ☆47Updated 6 months ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- ☆37Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆27Updated 4 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 9 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆17Updated 6 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- ☆30Updated 2 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 6 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Functional Inference of Gene Regulation☆46Updated last year
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆43Updated 4 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆40Updated 2 weeks ago
- Single-cell Orientation Tracing☆21Updated 3 years ago