nghiavtr / SCmutLinks
☆34Updated 6 years ago
Alternatives and similar repositories for SCmut
Users that are interested in SCmut are comparing it to the libraries listed below
Sorting:
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- scWGCNA☆61Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- ☆34Updated 6 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆47Updated 10 months ago
- ☆52Updated last year
- ☆32Updated 10 months ago
- ☆39Updated 3 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆40Updated 10 months ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 3 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Inferring CNV data from single cell ATAC seq☆25Updated 5 months ago
- ☆18Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Functional Inference of Gene Regulation☆49Updated last year
- ☆14Updated last year
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- ☆17Updated 6 years ago