nghiavtr / SCmut
☆31Updated 5 years ago
Alternatives and similar repositories for SCmut:
Users that are interested in SCmut are comparing it to the libraries listed below
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- ☆33Updated 5 years ago
- ☆33Updated 11 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- ☆15Updated 9 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- scWGCNA☆58Updated 2 years ago
- R code for single-cell analysis of intestinal epithelial cells☆21Updated 7 years ago
- ☆12Updated 8 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- ☆16Updated 5 years ago
- ☆45Updated 7 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- R-code used for single-cell RNA-Seq analysis of kidney data.☆18Updated 5 years ago
- R package of CSOmap(developing☆14Updated 3 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Single cell epigenomic clustering based on accessibility pattern☆22Updated 2 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆47Updated 3 years ago
- ☆27Updated 3 years ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Updated 4 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆33Updated last year
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Functions for single cell data analysis☆31Updated 3 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year