parklab / ShatterSeek
☆65Updated last year
Alternatives and similar repositories for ShatterSeek:
Users that are interested in ShatterSeek are comparing it to the libraries listed below
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 2 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆72Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆79Updated 11 months ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆80Updated last week
- Tutorial Website☆55Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated 3 weeks ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆96Updated 3 years ago
- ☆30Updated 6 years ago
- ☆40Updated 2 years ago
- R package containing useful functions for mutational signature analysis☆80Updated this week
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆72Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- QDNAseq package for Bioconductor☆49Updated 6 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆69Updated 4 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆56Updated 4 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆62Updated last month
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆75Updated last month
- ☆53Updated 3 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Microsatellite instability (MSI) detection for tumor only data.