☆76Jul 12, 2023Updated 2 years ago
Alternatives and similar repositories for ShatterSeek
Users that are interested in ShatterSeek are comparing it to the libraries listed below
Sorting:
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆47Apr 16, 2021Updated 4 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆158Jun 18, 2024Updated last year
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72May 23, 2024Updated last year
- An R package to time somatic mutations☆66Dec 12, 2020Updated 5 years ago
- ☆84Apr 17, 2025Updated 10 months ago
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- Various algorithms for analysing genomics data☆264Updated this week
- DriverPower☆26Jan 18, 2025Updated last year
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated last month
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆150Sep 9, 2020Updated 5 years ago
- Battenberg R package for subclonal copynumber estimation☆95Feb 20, 2026Updated last week
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- Mutational Signature Comprehensive Analysis Toolkit☆15Feb 19, 2026Updated 2 weeks ago
- Utility functions for FACETS☆39Oct 24, 2025Updated 4 months ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 7 years ago
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 4 years ago
- Search for activating regulatory variants in the tumor genome☆14Apr 11, 2025Updated 10 months ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- Implementation of FACETS for Terra☆12Jan 20, 2023Updated 3 years ago
- A Julia package for extracting mutation signatures using topic models☆19Feb 23, 2022Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 7 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆200Mar 20, 2024Updated last year
- ☆12Nov 6, 2023Updated 2 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Feb 15, 2026Updated 2 weeks ago
- deconstructSigs☆144Apr 24, 2023Updated 2 years ago
- ASCAT R package☆199Feb 12, 2026Updated 3 weeks ago
- SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the n…☆177Feb 1, 2026Updated last month
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆71Feb 26, 2026Updated last week
- ☆27Updated this week
- SNV calling from single cell sequencing☆119Nov 11, 2024Updated last year
- Somatic copy variant caller (CNV) for next generation sequencing☆75Sep 12, 2024Updated last year
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆42Aug 21, 2025Updated 6 months ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Jul 30, 2022Updated 3 years ago
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆75Feb 19, 2026Updated 2 weeks ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 3 years ago