☆80Jul 12, 2023Updated 3 years ago
Alternatives and similar repositories for ShatterSeek
Users that are interested in ShatterSeek are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code accompanying The Evolutionary history of 2,658 cancers☆48Apr 16, 2021Updated 5 years ago
- An R package to time somatic mutations☆73Dec 12, 2020Updated 5 years ago
- SV clustering☆31Jul 5, 2021Updated 5 years ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆162Jun 18, 2024Updated 2 years ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆86Apr 17, 2025Updated last year
- Various algorithms for analysing genomics data☆287Updated this week
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆73May 23, 2024Updated 2 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆149Sep 9, 2020Updated 5 years ago
- Mutational signature analysis for low statistics SNV data☆66Aug 7, 2024Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆45Apr 16, 2021Updated 5 years ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆42Jun 2, 2026Updated last month
- DriverPower☆26Jan 18, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆30Mar 1, 2026Updated 4 months ago
- ☆13Apr 16, 2026Updated 3 months ago
- Utility functions for FACETS☆40Oct 24, 2025Updated 9 months ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆214Mar 20, 2024Updated 2 years ago
- Battenberg R package for subclonal copynumber estimation☆99May 11, 2026Updated 2 months ago
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 7 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated 5 months ago
- Workflow for Sequenza, cellularity and ploidy☆28Jun 11, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆14Nov 12, 2019Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 8 years ago
- Fast method for inferring cancer clonal population structure from SNV data.☆75Jan 20, 2026Updated 6 months ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆72Jul 8, 2026Updated 2 weeks ago
- A tool for timing complex copy number gains in cancer.☆21Dec 4, 2025Updated 7 months ago
- ☆13Sep 24, 2025Updated 10 months ago
- Implementation of FACETS for Terra☆12Jan 20, 2023Updated 3 years ago
- SV detection tool for nanopore sequence reads☆98Mar 25, 2026Updated 4 months ago
- Battenberg algorithm and associated implementation script☆55Oct 21, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆286May 21, 2025Updated last year
- Structural variation and indel detection by local assembly☆256Jul 15, 2026Updated last week
- deconstructSigs☆144Apr 24, 2023Updated 3 years ago
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated last year
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Apr 10, 2019Updated 7 years ago
- Main repository for Drews et al. (Nature, 2022)☆43Aug 14, 2023Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago