parklab / ShatterSeekLinks
☆71Updated 2 years ago
Alternatives and similar repositories for ShatterSeek
Users that are interested in ShatterSeek are comparing it to the libraries listed below
Sorting:
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 9 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 5 years ago
- Battenberg R package for subclonal copynumber estimation☆91Updated last month
- Somatic copy variant caller (CNV) for next generation sequencing☆74Updated 11 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆79Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- Tumor Mutational Burden☆61Updated last month
- ☆76Updated 4 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆61Updated 2 weeks ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆52Updated 3 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- ☆45Updated 2 years ago
- BISulfite-seq CUI Toolkit☆66Updated 7 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- Tools for analyzing DNA methylation data☆43Updated this week
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 7 months ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆121Updated last year
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago