Alternatives and similar repositories for facets2n

Users that are interested in facets2n are comparing it to the libraries listed below

• beroukhim-lab / BISCUT-py3
  ☆12Updated last year
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆25Updated 2 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆30Updated 9 months ago
• davemcg / awesome_genome_browsers
  ☆10Updated 6 years ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆25Updated 3 years ago
• sigven / pharmOncoX
  Targeted and non-targeted anticancer drugs and drug regimens
  ☆30Updated 3 weeks ago
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆35Updated last month
• caravagnalab / CNAqc
  Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation
  ☆24Updated 2 months ago
• genemine / iread
  iread
  ☆25Updated 4 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 6 months ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 7 years ago
• vsbuffalo / rna-seq-example
  An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)
  ☆16Updated 13 years ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆42Updated last year
• jmw86069 / splicejam
  Sashimi plots for RNA-seq data using detected transcripts
  ☆29Updated 9 months ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 8 years ago
• mrcuizhe / interacCircos
  An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot
  ☆28Updated 3 years ago
• beroukhim-lab / ascets
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…
  ☆18Updated last year
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated last year
• PoisonAlien / somaticfreq
  knowledge-based genotyping of cancer hotspots from the tumor BAM files
  ☆21Updated 4 years ago
• databio / bedshift
  Bedfile perturbation tool
  ☆17Updated 3 months ago
• Oshlack / Slinker
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Updated 3 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆15Updated last year
• camoragaq / BrumiR
  BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.
  ☆12Updated 3 years ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆19Updated last year
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated 2 years ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated 3 weeks ago
• YaoLab-Bioinfo / intansv
  Integrative analysis of structural variations.
  ☆40Updated 2 years ago
• flemingtonlab / SpliceTools
  ☆17Updated last year
• gladkia / igvR
  An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser
  ☆46Updated 2 weeks ago
• gtonkinhill / TCGA_analysis
  ☆26Updated 2 years ago