Alternatives and similar repositories for facets2n

Users that are interested in facets2n are comparing it to the libraries listed below

• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆22Updated 2 years ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆41Updated last year
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 11 months ago
• beroukhim-lab / ascets
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…
  ☆17Updated last year
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆29Updated 8 months ago
• smped / ngsReports
  ☆23Updated last week
• sigven / cacao
  Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
  ☆21Updated 4 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• beroukhim-lab / BISCUT-py3
  ☆12Updated last year
• caravagnalab / CNAqc
  Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation
  ☆22Updated 4 months ago
• danro9685 / ASCETIC
  ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…
  ☆12Updated 5 months ago
• databio / bedshift
  Bedfile perturbation tool
  ☆17Updated last year
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 6 months ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 9 months ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 3 months ago
• sigven / pharmOncoX
  Targeted and non-targeted anticancer drugs and drug regimens
  ☆29Updated this week
• mrcuizhe / interacCircos
  An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot
  ☆28Updated 3 years ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆18Updated last year
• genemine / iread
  iread
  ☆25Updated 4 years ago
• PoisonAlien / somaticfreq
  knowledge-based genotyping of cancer hotspots from the tumor BAM files
  ☆21Updated 3 years ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 8 months ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated 3 years ago
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆26Updated 3 months ago
• MathOnco / EvoFreq
  Evolutionary frequency visualization tool of temporal data
  ☆23Updated 3 years ago
• AlexandrovLab / TMB_plotter
  Python function for TMB snake plots
  ☆16Updated 5 years ago
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆38Updated last year
• mccoy-lab / hgv_modules
  Teaching modules for Human Genome Variation Lab.
  ☆20Updated 3 months ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated 2 years ago
• trichelab / MTseeker
  mitochondrial variant analysis tools
  ☆15Updated 4 years ago
• YaoLab-Bioinfo / intansv
  Integrative analysis of structural variations.
  ☆40Updated last year