mskcc / facets2nLinks
Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations
☆12Updated 2 years ago
Alternatives and similar repositories for facets2n
Users that are interested in facets2n are comparing it to the libraries listed below
Sorting:
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- iread☆25Updated 4 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 2 months ago
- ☆12Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 9 months ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆24Updated 2 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆35Updated 3 weeks ago
- 📊 An R package of RNA-seq workflow☆15Updated 3 years ago
- Filter and prioritize fusion calls☆20Updated last year
- Targeted and non-targeted anticancer drugs and drug regimens☆29Updated last week
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 3 years ago
- Genomic plot in trellis layout☆41Updated last year
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆20Updated 11 months ago
- Calculate and plot distributions of genomic ranges☆26Updated 7 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Differential expression and allelic analysis, nonparametric statistics☆30Updated 11 months ago
- ☆10Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Integrative analysis of structural variations.☆40Updated last year
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Updated last year
- TOP results by CONfident efFECT Sizes.☆14Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated 2 months ago
- DriverPower☆26Updated 10 months ago
- Python function for TMB snake plots☆16Updated 5 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.☆12Updated 3 years ago