mskcc / facets2nLinks
Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations
☆11Updated last year
Alternatives and similar repositories for facets2n
Users that are interested in facets2n are comparing it to the libraries listed below
Sorting:
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- ☆12Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 7 months ago
- ☆17Updated 10 months ago
- ☆9Updated 4 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆11Updated last month
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- interactive plots for differential expression analysis☆32Updated 2 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Python function for TMB snake plots☆16Updated 4 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last week
- 📊 An R package of RNA-seq workflow☆16Updated 3 years ago
- Filter and prioritize fusion calls☆20Updated 8 months ago
- R package for DNA methylation analysis☆18Updated 9 months ago
- iread☆24Updated 3 years ago
- Bedfile perturbation tool☆17Updated last year
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆13Updated last month
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- DriverPower☆26Updated 4 months ago
- End-guided RNA assembler☆15Updated last month
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month
- Teaching modules for Human Genome Variation Lab.☆20Updated 10 months ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago