R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after correcting for genomic covariates.
☆32Oct 29, 2025Updated 6 months ago
Alternatives and similar repositories for fishHook
Users that are interested in fishHook are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rocking R at UMCCR☆10Oct 11, 2020Updated 5 years ago
- Utility functions to extend and optimize GenomicRanges functionality.☆10May 16, 2026Updated last week
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17May 10, 2026Updated 2 weeks ago
- DRAGEN Tumor/Normal workflow post-processing☆24Sep 18, 2023Updated 2 years ago
- ☆11Apr 25, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Sep 3, 2021Updated 4 years ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Aug 22, 2022Updated 3 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Mar 23, 2025Updated last year
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 6 years ago
- Git repo for CONIPHER tree building☆27Mar 20, 2025Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆73May 23, 2024Updated 2 years ago
- An R package to time somatic mutations☆71Dec 12, 2020Updated 5 years ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆72Mar 19, 2026Updated 2 months ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆14Apr 9, 2022Updated 4 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Jan 17, 2020Updated 6 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆21Jul 6, 2023Updated 2 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Aug 25, 2020Updated 5 years ago
- A collection of scripts used to recreate files and graphs used in the MMRF CoMMpass analysis.☆24Nov 23, 2025Updated 6 months ago
- Mutational signature analysis for low statistics SNV data☆66Aug 7, 2024Updated last year
- ☆26Dec 9, 2022Updated 3 years ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆15Jun 10, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 5 years ago
- Battenberg R package for subclonal copynumber estimation☆95May 11, 2026Updated 2 weeks ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Feb 13, 2025Updated last year
- mutSignatures R package - updated (dev) version - 2.1.4☆14Jan 18, 2023Updated 3 years ago
- R Deep Learning Projects, published by Packt☆22Jan 30, 2023Updated 3 years ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆40Nov 28, 2023Updated 2 years ago
- Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Canc…☆30Apr 7, 2026Updated last month
- Pipeline for generating RNAseq-based cancer patient reports☆12Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Apr 8, 2022Updated 4 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- ASCAT R package☆200Feb 12, 2026Updated 3 months ago
- R package containing useful functions for mutational signature analysis☆86May 18, 2026Updated last week
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Apr 24, 2026Updated last month
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Mar 24, 2026Updated 2 months ago