Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
☆30Apr 16, 2020Updated 5 years ago
Alternatives and similar repositories for single_cell_classification
Users that are interested in single_cell_classification are comparing it to the libraries listed below
Sorting:
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- ☆63Dec 27, 2023Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Mar 21, 2021Updated 4 years ago
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 3 years ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Jun 30, 2023Updated 2 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- ☆15Apr 26, 2022Updated 3 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Jul 22, 2020Updated 5 years ago
- Code and analysis pipeline for NASC-seq.☆11Jun 14, 2022Updated 3 years ago
- Modeling of time series data for CRISPR KO experiments☆38Jan 5, 2026Updated last month
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆16Mar 11, 2024Updated last year
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 4 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆26Jan 11, 2023Updated 3 years ago
- ☆16Mar 2, 2023Updated 3 years ago
- ☆15Jun 2, 2022Updated 3 years ago
- ☆47Apr 18, 2020Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Sep 1, 2023Updated 2 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆17Jan 5, 2020Updated 6 years ago
- ☆17May 15, 2024Updated last year
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- repository containing analysis scripts and auxiliary files☆37Apr 9, 2020Updated 5 years ago
- A single-cell transcriptomic analysis of endometriosis, endometriomas, eutopic endometrial samples and uninvolved ovary tissues highlight…☆18Jan 12, 2023Updated 3 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Jun 21, 2022Updated 3 years ago
- ☆10May 31, 2022Updated 3 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Jan 6, 2021Updated 5 years ago
- What you need to process the Quarterly DepMap-Omics releases from Terra☆125Feb 5, 2026Updated 3 weeks ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated last month
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆22May 21, 2024Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Jul 20, 2024Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 2 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Aug 18, 2018Updated 7 years ago
- Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript☆17Nov 13, 2017Updated 8 years ago
- A Bioconductor package to retrieve and analyze data from the Human Protein Atlas☆39Dec 7, 2025Updated 2 months ago