broadinstitute / single_cell_classificationLinks
Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
☆30Updated 5 years ago
Alternatives and similar repositories for single_cell_classification
Users that are interested in single_cell_classification are comparing it to the libraries listed below
Sorting:
- Fast motif matching in R☆46Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Updated 4 years ago
- ☆38Updated 4 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- ☆54Updated last year
- ☆63Updated 2 years ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 11 months ago
- scWGCNA☆61Updated 3 years ago
- Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…☆19Updated 11 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆28Updated 5 years ago
- ☆48Updated last year
- Code related to the Celligner manuscript☆46Updated 5 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- ☆39Updated 4 years ago
- benchmark for single-cell RNA-seq imputation methods☆29Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last week
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 4 years ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 3 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated 3 weeks ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Updated 2 years ago
- Materials and scripts for building cell type encyclopedia table☆20Updated 2 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last week
- ☆24Updated 4 months ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 6 years ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆14Updated last year