broadinstitute / single_cell_classificationLinks
Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
☆30Updated 5 years ago
Alternatives and similar repositories for single_cell_classification
Users that are interested in single_cell_classification are comparing it to the libraries listed below
Sorting:
- Fast motif matching in R☆46Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- Tools for assessing clustering robustness☆31Updated last week
- ☆62Updated 2 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Updated 2 years ago
- ☆39Updated 4 years ago
- Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…☆18Updated 11 months ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated 3 weeks ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- ☆38Updated 4 months ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 4 years ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 10 months ago
- ☆48Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- Easy and comprehensive biological network reconstruction and analysis☆34Updated 4 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- The scripts used for analyzing JAX mouse dataset☆26Updated last year
- A shell to facilitate loading / running CIBERSORT software in structured environments☆26Updated 7 years ago
- Code related to the Celligner manuscript☆46Updated 5 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 3 years ago
- ☆29Updated 2 years ago
- Single-cell Case Control Analysis☆52Updated this week
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated this week
- ☆53Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago