broadinstitute / single_cell_classification
Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
☆27Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for single_cell_classification
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆32Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- ☆40Updated 3 months ago
- ☆27Updated 3 months ago
- ☆29Updated 6 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- ☆37Updated 10 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆26Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 3 years ago
- ☆20Updated last year
- ☆29Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆47Updated 2 years ago
- scWGCNA☆55Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 2 years ago
- An R package to plot maps of clone distributions in somatic evolution☆15Updated 10 months ago
- ☆53Updated 10 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆23Updated 2 years ago
- ☆30Updated 6 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- ☆37Updated 3 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆18Updated 4 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆51Updated 2 years ago
- ☆15Updated last month