Alternatives and similar repositories for single_cell_classification:

Users that are interested in single_cell_classification are comparing it to the libraries listed below

• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 4 years ago
• wenweixiong / MARVEL
  ☆47Updated 8 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆41Updated last year
• foreverdream2 / dysfunction_interaction_test
  ☆28Updated 6 years ago
• shendurelab / single-cell-ko-screens
  Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…
  ☆26Updated 3 years ago
• Mayrlab / scUTRquant
  Bioinformatics pipeline for single-cell 3' UTR isoform quantification
  ☆21Updated 4 months ago
• UPSUTER / GEMLI
  ☆30Updated 2 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆58Updated 2 years ago
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆25Updated 2 years ago
• lhe17 / nebula
  ☆37Updated 2 weeks ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆43Updated last year
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆45Updated last year
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆43Updated 3 years ago
• quadbio / RNAseq_tutorial
  ☆24Updated 5 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆55Updated last year
• gxiaolab / scAllele
  ☆33Updated 11 months ago
• nghiavtr / SCmut
  ☆32Updated 5 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆24Updated 3 years ago
• zhengtaoxiao / Single-Cell-Metabolic-Landscape
  Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data
  ☆22Updated 3 years ago
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated 2 years ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 5 years ago
• saezlab / footprints
  Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"
  ☆20Updated 6 years ago
• amf71 / cloneMap
  An R package to plot maps of clone distributions in somatic evolution
  ☆17Updated last year
• liulab-dfci / lisa2
  ☆30Updated 2 years ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆34Updated 4 years ago
• shenorrLabTRDF / cellAlign
  ☆40Updated 4 years ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆26Updated 4 years ago
• EngreitzLab / ABC-GWAS-Paper
  Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021
  ☆14Updated 4 years ago
• broadinstitute / gtex-single-nucleus-reference
  Code repository for the snRNA-seq cross-tissue atlas project
  ☆20Updated 3 years ago