Alternatives and similar repositories for single_cell_classification

Users that are interested in single_cell_classification are comparing it to the libraries listed below

• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last week
• gabrielakinker / CCLE_heterogeneity
  ☆58Updated last year
• wenweixiong / MARVEL
  ☆49Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆46Updated last year
• shendurelab / single-cell-ko-screens
  Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…
  ☆26Updated 3 years ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 4 years ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated 11 months ago
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆41Updated 3 weeks ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆46Updated 2 years ago
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆53Updated 2 years ago
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated 2 years ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆34Updated 3 years ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 4 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• Winnie09 / imputationBenchmark
  benchmark for single-cell RNA-seq imputation methods
  ☆26Updated last year
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆38Updated 2 years ago
• ggjlab / scHCL
  ☆48Updated 5 years ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆37Updated 3 weeks ago
• showteeth / GEfetch2R
  GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
  ☆36Updated 4 months ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆33Updated 4 months ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 5 months ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆47Updated last year
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆57Updated last year
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆27Updated 3 years ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• wwylab / DeMixT
  ☆36Updated last year