beroukhim-lab / BISCUT-py3Links
☆12Updated last year
Alternatives and similar repositories for BISCUT-py3
Users that are interested in BISCUT-py3 are comparing it to the libraries listed below
Sorting:
- Python function for TMB snake plots☆16Updated 5 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated 3 weeks ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- DriverPower☆26Updated 9 months ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- iread☆25Updated 4 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Updated 4 years ago
- ☆17Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Updated 4 years ago
- GWAS and rare variants tests at high speed using regenie☆15Updated this week
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated 3 weeks ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Implementation of FACETS for Terra☆12Updated 2 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- Filter and prioritize fusion calls☆20Updated last year
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 6 months ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆13Updated 3 months ago
- Calculate and plot distributions of genomic ranges☆26Updated 6 months ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆12Updated 5 years ago
- Evolutionary frequency visualization tool of temporal data☆23Updated 3 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year