beroukhim-lab / BISCUT-py3Links
☆12Updated last year
Alternatives and similar repositories for BISCUT-py3
Users that are interested in BISCUT-py3 are comparing it to the libraries listed below
Sorting:
- Python function for TMB snake plots☆16Updated 5 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated this week
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month
- GWAS and rare variants tests at high speed using regenie☆15Updated 9 months ago
- Filter and prioritize fusion calls☆20Updated last year
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- DriverPower☆26Updated 8 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last week
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Updated 4 years ago
- ☆17Updated last year
- iread☆25Updated 4 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 6 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆12Updated 2 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- ☆12Updated last year
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 5 months ago
- ☆12Updated 5 years ago