A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clustering: alignWigToBed; )
☆32Nov 10, 2021Updated 4 years ago
Alternatives and similar repositories for Bis-tools
Users that are interested in Bis-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆41Apr 15, 2021Updated 4 years ago
- BISulfite-seq CUI Toolkit☆70Oct 9, 2025Updated 5 months ago
- BISulfite-seq CUI Toolkit☆26Feb 17, 2026Updated last month
- The EpiDiverse Bisulfite SNP-Calling and Methylation Clustering Pipeline, implemented with Nextflow☆12Jul 23, 2022Updated 3 years ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- DMR Identification Tool☆34Jul 6, 2023Updated 2 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Oct 7, 2022Updated 3 years ago
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Nov 18, 2023Updated 2 years ago
- DNA methylation analysis notes from Ming Tang☆93Sep 19, 2019Updated 6 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 5 years ago
- DCC/DAC methylation pipeline source☆56Jul 29, 2020Updated 5 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆15Feb 19, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Code accompanying The Evolutionary history of 2,658 cancers☆47Apr 16, 2021Updated 4 years ago
- MicrOSAtellite Instability Classifier☆15Dec 12, 2017Updated 8 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆12May 19, 2021Updated 4 years ago
- Finds DAMEs - Differential Allelicly MEthylated regions☆10Jul 29, 2025Updated 7 months ago
- ☆10Nov 18, 2022Updated 3 years ago
- Updated and optimized fork of BSMAP☆24Dec 28, 2020Updated 5 years ago
- ☆10May 31, 2022Updated 3 years ago
- Tools for analyzing DNA methylation data☆44Feb 15, 2026Updated last month
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆185Feb 24, 2026Updated last month
- A comprehensive collection of long inverted repeats in 424 eukaryotic genomes☆16Nov 4, 2021Updated 4 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Feb 23, 2026Updated last month
- Code for finding putative enhancers using Hi-C data☆28Feb 27, 2018Updated 8 years ago
- Optimized DMR analysis based on bimodal normal distribution model and cost function for regional methylation analysis.☆17Sep 13, 2021Updated 4 years ago
- Identification of differentially methylated regions between multiple epigenomes from BS-treated read mappings via methylated region calli…☆13Sep 1, 2023Updated 2 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated this week
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- Z Hu et al. The repertoire of serous ovarian cancer non-genetic heterogeneity revealed by single-cell sequencing of normal fallopian tube…☆13Nov 22, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆38Feb 27, 2020Updated 6 years ago
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆87Sep 24, 2024Updated last year
- A framework to infer mutational signatures in cancer over time☆56Jul 9, 2019Updated 6 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Sep 23, 2024Updated last year
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆20Sep 8, 2023Updated 2 years ago
- Clonal reconstruction from HTS data☆10Oct 27, 2021Updated 4 years ago
- ☆11Mar 14, 2026Updated last week