dnaase / Bis-tools
A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clustering: alignWigToBed; )
☆31Updated 3 years ago
Alternatives and similar repositories for Bis-tools:
Users that are interested in Bis-tools are comparing it to the libraries listed below
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 3 months ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- ☆13Updated 7 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Long-read Isoform Quantification and Analysis☆39Updated last month
- ☆16Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- ☆23Updated 3 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Genomic Association Tester☆30Updated last year
- ☆28Updated 11 months ago
- R package to detect splicing QTLs (sQTLs)☆12Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Clonality inference in multiple tumor samples using phylogeny☆13Updated 7 years ago
- Long read to rMATS☆31Updated last year
- ☆33Updated last year
- Burden testing against public controls☆50Updated last year
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Somatic point mutation caller☆28Updated 2 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆41Updated last week
- RNA editing tests☆16Updated 4 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆34Updated 3 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated last year
- Tools for analyzing DNA methylation data☆36Updated 2 weeks ago
- ☆21Updated 2 months ago
- 4C-seq processing pipeline☆23Updated 10 months ago