dnaase / Bis-tools
A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clustering: alignWigToBed; )
☆31Updated 3 years ago
Alternatives and similar repositories for Bis-tools:
Users that are interested in Bis-tools are comparing it to the libraries listed below
- ☆13Updated 7 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- ☆23Updated 3 years ago
- BISulfite-seq CUI Toolkit☆19Updated last week
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Genomic Association Tester☆31Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- ☆22Updated 4 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 4 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Reconstruction of focal amplifications with long reads☆20Updated 3 weeks ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- allele specific DNA methylation haplotype region☆14Updated last year
- ☆16Updated 6 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 3 weeks ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 2 years ago
- ☆28Updated last year
- ☆46Updated 5 years ago
- Third-generation fusion gene detection☆14Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- snakemake workflow for post-processing scATACseq data☆20Updated 4 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- QDNAseq package for Bioconductor☆50Updated 8 months ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago