dnaase / Bis-toolsLinks
A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clustering: alignWigToBed; )
☆32Updated 4 years ago
Alternatives and similar repositories for Bis-tools
Users that are interested in Bis-tools are comparing it to the libraries listed below
Sorting:
- ☆39Updated 4 years ago
- QDNAseq package for Bioconductor☆54Updated last year
- BISulfite-seq CUI Toolkit☆26Updated last week
- Long read to rMATS☆32Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago
- Tools for analyzing DNA methylation data☆44Updated last month
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ☆46Updated 6 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- ☆22Updated 2 months ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- Genomic Association Tester☆35Updated 2 years ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- ☆13Updated 8 years ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated 3 weeks ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 3 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆30Updated 7 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 8 months ago
- HiC for copy Number variation and Translocation detection☆41Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆45Updated 8 years ago
- ☆75Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Updated 4 years ago