hase62 / Neoantimon
Published at Bioinformatics
☆12Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for Neoantimon
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆20Updated 4 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated 7 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- ☆8Updated 6 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆38Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 5 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆17Updated 2 years ago
- Python function for TMB snake plots☆16Updated 4 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆27Updated 4 years ago
- ☆16Updated 3 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- ☆20Updated last year
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 3 months ago
- Mean Alterations Using Discrete Expression☆13Updated 7 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 2 years ago
- ☆15Updated 5 months ago
- ☆18Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated 4 months ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- WES HLA Typing based on multiple alternative tools☆15Updated 3 years ago