amf71 / ECLIPSELinks
☆11Updated 2 years ago
Alternatives and similar repositories for ECLIPSE
Users that are interested in ECLIPSE are comparing it to the libraries listed below
Sorting:
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 5 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- Workflow for Sequenza, cellularity and ploidy☆20Updated last month
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- ☆17Updated last year
- Scripts used for the ACT paper☆12Updated 4 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆20Updated last month
- ☆12Updated 2 years ago
- ☆15Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 10 months ago
- ☆25Updated 2 years ago
- GENome Organisation Visual Analytics☆16Updated 3 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆14Updated 2 months ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Updated 4 years ago
- ☆12Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- ☆13Updated 3 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- ☆32Updated 9 months ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆10Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- ☆18Updated 4 years ago
- Peak calling for 4C data☆12Updated 7 years ago
- ☆11Updated 7 years ago