☆11May 26, 2023Updated 2 years ago
Alternatives and similar repositories for ECLIPSE
Users that are interested in ECLIPSE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Nov 21, 2023Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Jul 27, 2023Updated 2 years ago
- ☆16Aug 11, 2021Updated 4 years ago
- Git repo for CONIPHER tree building☆26Mar 20, 2025Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Jan 31, 2024Updated 2 years ago
- CNV detection tool for WES data☆12Aug 21, 2024Updated last year
- Run multiple Pipeline5 instances at once☆11Jun 6, 2025Updated 9 months ago
- Easy Copy Number !☆21Aug 27, 2025Updated 6 months ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Apr 12, 2023Updated 2 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated last year
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆12Sep 15, 2023Updated 2 years ago
- ☆20Jul 14, 2022Updated 3 years ago
- ☆14Apr 20, 2023Updated 2 years ago
- mesa package for Methylation Enrichment Sequencing Analysis☆15Updated this week
- ☆10May 21, 2024Updated last year
- Pipeline to detect HLA disruption from WES and RNAseq data☆22Feb 17, 2025Updated last year
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Jan 17, 2020Updated 6 years ago
- A toolkit to design standard primers, multiplexed primers, and primers around SV's☆13Oct 29, 2022Updated 3 years ago
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 4 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- ☆17Jul 19, 2024Updated last year
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Clonality inference in multiple tumor samples using phylogeny☆13Sep 12, 2017Updated 8 years ago
- ☆13Feb 14, 2023Updated 3 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Nov 28, 2025Updated 3 months ago
- ☆23May 31, 2022Updated 3 years ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆22Nov 16, 2020Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 7 years ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 4 years ago
- ☆19Oct 23, 2023Updated 2 years ago
- ☆28Sep 20, 2023Updated 2 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Locate transgenic insertion sites☆11Mar 14, 2023Updated 3 years ago
- Fast python code to merge paired-end reads☆13Oct 29, 2021Updated 4 years ago
- Plot CNV data with a genome viewer in R☆15Apr 5, 2017Updated 8 years ago
- ☆23Mar 12, 2026Updated last week
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆14Nov 13, 2025Updated 4 months ago