Alternatives and similar repositories for VistoSeg

Users that are interested in VistoSeg are comparing it to the libraries listed below

• AmandaKedaigle / OrganoidAtlas
  Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
  ☆21Updated 3 years ago
• almaan / ST-mLiver
  Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in t…
  ☆19Updated 3 years ago
• parveendabas / GBMatlas
  ☆18Updated 2 years ago
• KChen-lab / MEDALT
  Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
  ☆21Updated 2 years ago
• walsh-quail-labs / IMC_Brain
  ☆20Updated 2 years ago
• Olaniru / human-fetal-pancreas
  analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages
  ☆10Updated 2 years ago
• ludvigla / STUtility_web_site
  ☆15Updated 3 years ago
• msraredon / Connectome
  ☆29Updated 3 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 6 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆29Updated 2 years ago
• KChen-lab / bindSC
  Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…
  ☆36Updated 2 years ago
• ventolab / Human-Gonadal-Development-Atlas_HGDA
  ☆21Updated 9 months ago
• dyxmvp / Spatial_ATAC-seq
  ☆22Updated 2 years ago
• tkamath1 / Kamathetal2022
  Code to reproduce analyses and figures for Kamath et al., 2022
  ☆11Updated 3 years ago
• GuignardLab / sc3D
  Spatial Single Cell transcriptomic library
  ☆18Updated 3 months ago
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆19Updated 4 years ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆25Updated 3 years ago
• SydneyBioX / scClassify
  Hierarchical classification of cells
  ☆26Updated last year
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• quadbio / simspec
  Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
  ☆35Updated last year
• friedpine / scRNASeq_ESCC
  The code for processing single cell RNA-Seq dataset from ESCC cohorts
  ☆11Updated 4 years ago
• liuqivandy / SpaGene
  ☆24Updated 2 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 6 months ago
• mbourgey / scRNA_GBM
  analysis script for GBM single cell RNA seq data
  ☆21Updated 4 years ago
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆33Updated 5 months ago
• CostaLab / scrna_seurat_pipeline
  comprehensive analysis of single-cell transcriptomics data
  ☆24Updated 6 months ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆13Updated 2 years ago
• theislab / cellrank_reproducibility
  CellRank's reproducibility repository.
  ☆15Updated 3 years ago
• Winnie09 / Lamian
  ☆57Updated last month
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆45Updated 3 years ago