Image processing pipeline for spatial projects
☆18Aug 3, 2023Updated 3 years ago
Alternatives and similar repositories for VistoSeg
Users that are interested in VistoSeg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- code and dataset for spatialDWLS☆14Apr 18, 2021Updated 5 years ago
- Single Cell RNA PolyA Site Discovery☆11Updated this week
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆16Aug 10, 2026Updated 2 months ago
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆37Aug 14, 2026Updated 2 months ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- ☆10Apr 7, 2023Updated 3 years ago
- Normalization for single cell RNA-seq data☆11Aug 25, 2022Updated 4 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆12Dec 13, 2024Updated last year
- ☆10Sep 26, 2024Updated 2 years ago
- ☆21Jun 29, 2022Updated 4 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆13Jan 30, 2023Updated 3 years ago
- Custom curriculum for teaching R, the Unix Shell, & Git with an integrated workflow and reproducible research practices.☆10Feb 25, 2026Updated 8 months ago
- ☆12May 11, 2016Updated 10 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Drug-Target Interaction Prediction Using Convolutional Neural Networks By Images of Compounds☆10Jun 16, 2020Updated 6 years ago
- Spatially-aware quality control for spatial transcriptomics☆17Oct 16, 2026Updated 2 weeks ago
- ☆13Apr 11, 2023Updated 3 years ago
- ☆13Apr 16, 2021Updated 5 years ago
- Official Implementation of Multi-Masked Aggregators for Graph Neural Networks in Pytorch and PyTorch Geometric☆11Mar 24, 2023Updated 3 years ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆97Mar 26, 2026Updated 7 months ago
- ☆13Jul 26, 2026Updated 3 months ago
- R package of CSOmap(developing☆13Mar 22, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Jun 25, 2024Updated 2 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆116Oct 16, 2026Updated 2 weeks ago
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- ☆19Mar 31, 2024Updated 2 years ago
- Client-side REST access to KEGG☆15Jul 22, 2026Updated 3 months ago
- ☆10May 12, 2020Updated 6 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆57Sep 24, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆16Mar 15, 2023Updated 3 years ago
- scLearn：Learning for single cell assignment☆35Dec 13, 2024Updated last year
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- Perturb-seq analysis package☆16May 2, 2024Updated 2 years ago
- Spatially resolved transcriptomic analysis☆68Nov 17, 2022Updated 3 years ago
- Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776)☆10Oct 23, 2026Updated last week
- ☆11Feb 18, 2019Updated 7 years ago