LieberInstitute / VistoSegLinks
Image processing pipeline for spatial projects
☆15Updated last year
Alternatives and similar repositories for VistoSeg
Users that are interested in VistoSeg are comparing it to the libraries listed below
Sorting:
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆28Updated 3 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆20Updated 3 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- ☆27Updated last month
- ☆37Updated last year
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆12Updated 7 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 2 weeks ago
- ☆11Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 3 months ago
- iterative clustering pipeline of big single cell datasets.☆32Updated last month
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆10Updated last year
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 4 years ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆16Updated 2 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆17Updated 11 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆28Updated last year
- ☆26Updated last year
- CAST package☆40Updated 7 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 3 months ago
- .h5mu files interface for Seurat☆30Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated 11 months ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆18Updated 2 years ago
- ☆38Updated 8 months ago
- comprehensive analysis of single-cell transcriptomics data☆22Updated 2 months ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- CellRank's reproducibility repository.☆15Updated 3 years ago
- Code to reproduce analyses and figures for Kamath et al., 2022☆10Updated 3 years ago
- Scripts from the GBM cellular states paper☆18Updated 4 years ago