Image processing pipeline for spatial projects
☆17Aug 3, 2023Updated 2 years ago
Alternatives and similar repositories for VistoSeg
Users that are interested in VistoSeg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated 3 months ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Aug 24, 2023Updated 2 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- ☆13Apr 11, 2023Updated 3 years ago
- Drug-Target Interaction Prediction Using Convolutional Neural Networks By Images of Compounds☆10Jun 16, 2020Updated 5 years ago
- ☆13Apr 16, 2021Updated 5 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- ☆12May 11, 2016Updated 10 years ago
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- ☆11Jun 25, 2024Updated last year
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- R package of CSOmap(developing☆13Mar 22, 2022Updated 4 years ago
- Official Implementation of Multi-Masked Aggregators for Graph Neural Networks in Pytorch and PyTorch Geometric☆11Mar 24, 2023Updated 3 years ago
- ☆15Mar 15, 2023Updated 3 years ago
- Perturb-seq analysis package☆16May 2, 2024Updated 2 years ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆179Jan 8, 2026Updated 4 months ago
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆31Mar 26, 2026Updated 2 months ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- DTI-ALPS: diffusion tensor imaging along the perivascular space☆22Sep 15, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16May 10, 2022Updated 4 years ago
- scLearn：Learning for single cell assignment☆35Dec 13, 2024Updated last year
- perivascular space segmentation☆17Sep 2, 2022Updated 3 years ago
- ☆15Aug 13, 2021Updated 4 years ago
- ☆16Jun 2, 2021Updated 4 years ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆36May 14, 2020Updated 6 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 4 years ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated 10 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆458Jan 22, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Segmentation-free Analysis of In Situ Capture data☆14Apr 6, 2026Updated last month
- Spatial reconstruction of dissociated single-cell data☆19Jan 12, 2024Updated 2 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆41Aug 23, 2023Updated 2 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- ☆28Nov 21, 2019Updated 6 years ago
- R API and htmlwidget for Vitessce☆45Aug 13, 2025Updated 9 months ago