LieberInstitute / VistoSegLinks
Image processing pipeline for spatial projects
☆15Updated 2 years ago
Alternatives and similar repositories for VistoSeg
Users that are interested in VistoSeg are comparing it to the libraries listed below
Sorting:
- ☆18Updated 2 years ago
- ☆15Updated 3 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Updated 3 years ago
- ☆29Updated 3 years ago
- Code to reproduce analyses and figures for Kamath et al., 2022☆10Updated 3 years ago
- ☆20Updated 2 years ago
- Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in t…☆18Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Updated 2 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆20Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆23Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆33Updated last year
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- Scripts from the GBM cellular states paper☆19Updated 4 years ago
- ☆22Updated 2 years ago
- Trends in single cell papers☆16Updated 11 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- ☆14Updated 2 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 10 months ago
- UHCA☆11Updated 7 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆29Updated 2 years ago
- A record of the analysis pipelines used to create the HTAPP data☆33Updated 4 months ago
- iterative clustering pipeline of big single cell datasets.☆33Updated this week
- Spatial Single Cell transcriptomic library☆18Updated 2 months ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆16Updated 8 months ago
- The code for processing single cell RNA-Seq dataset from ESCC cohorts☆11Updated 4 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year