JinmiaoChenLab / SEDR_analysesLinks
☆39Updated last year
Alternatives and similar repositories for SEDR_analyses
Users that are interested in SEDR_analyses are comparing it to the libraries listed below
Sorting:
- ☆61Updated 10 months ago
- Identify spatial domain☆80Updated 3 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆73Updated 3 years ago
- ☆128Updated last year
- ☆41Updated last year
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆235Updated last year
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆28Updated last year
- ☆13Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆57Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆45Updated last year
- ☆122Updated 3 years ago
- ☆141Updated 8 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆67Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆46Updated 2 years ago
- overview of spatial datasets☆76Updated last year
- Her2 Breast Cancer Project☆87Updated 2 years ago
- Cell clustering for spatial transcriptomics data with graph neural network☆63Updated 2 years ago
- ☆59Updated last year
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆83Updated last year
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Updated 2 years ago
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆24Updated last year
- domain adaptation of spatial and single-cell transcriptome☆27Updated 11 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆73Updated last year
- Spatial-Linked Alignment Tool☆88Updated 8 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆95Updated 5 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- a unified single-cell data integration framework by optimal transport☆35Updated 11 months ago
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆22Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated last year
- ☆14Updated 2 years ago