raphael-group / pasteLinks
Probabilistic Alignment of Spatial Transcriptomics Experiments
☆96Updated 9 months ago
Alternatives and similar repositories for paste
Users that are interested in paste are comparing it to the libraries listed below
Sorting:
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- overview of spatial datasets☆76Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 9 months ago
- spatial transcriptome, single cell☆71Updated 2 years ago
- ☆45Updated 4 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆144Updated last week
- Code for the spatialLIBD R/Bioconductor package and shiny app☆104Updated last week
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 3 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆39Updated last year
- End-to-end analysis of spatial multi-omics data☆97Updated last month
- ☆56Updated last year
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆69Updated 3 weeks ago
- ☆127Updated 3 years ago
- ☆125Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆76Updated 9 months ago
- Spatial-Linked Alignment Tool☆89Updated 11 months ago
- ☆61Updated 2 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆145Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆136Updated 9 months ago
- ☆46Updated last year
- ☆50Updated last month
- Spatial mapping of cell types by integration of transcriptomics data☆98Updated 3 years ago
- ☆60Updated last year
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆72Updated 10 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆69Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆115Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆48Updated last year
- Code used to benchmark Xenium☆71Updated last year