raphael-group / pasteLinks
Probabilistic Alignment of Spatial Transcriptomics Experiments
☆98Updated 10 months ago
Alternatives and similar repositories for paste
Users that are interested in paste are comparing it to the libraries listed below
Sorting:
- End-to-end analysis of spatial multi-omics data☆101Updated 2 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Updated 4 years ago
- ☆47Updated 5 months ago
- overview of spatial datasets☆76Updated last year
- spatial transcriptome, single cell☆73Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 10 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 4 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆147Updated last month
- Code for the spatialLIBD R/Bioconductor package and shiny app☆108Updated this week
- ☆128Updated 3 years ago
- ☆127Updated last year
- ☆60Updated last year
- Spatial-Linked Alignment Tool☆90Updated last year
- ☆57Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆40Updated last year
- ☆53Updated 4 years ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆72Updated 2 months ago
- ☆52Updated 3 months ago
- Spatial mapping of cell types by integration of transcriptomics data☆100Updated 3 years ago
- ☆62Updated 2 years ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆69Updated 2 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆147Updated 2 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆76Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆93Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 10 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆79Updated 10 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆70Updated last month
- Code used to benchmark Xenium☆73Updated last year