Probabilistic Alignment of Spatial Transcriptomics Experiments
☆100Feb 26, 2025Updated last year
Alternatives and similar repositories for paste
Users that are interested in paste are comparing it to the libraries listed below
Sorting:
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆42Mar 2, 2025Updated 11 months ago
- ☆14Jan 25, 2023Updated 3 years ago
- Spatial-Linked Alignment Tool☆90Dec 20, 2024Updated last year
- Spatial alignment of single cell transcriptomic data.☆354Jul 1, 2025Updated 7 months ago
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- Learning cell communication from spatial graphs of cells☆113Jan 15, 2024Updated 2 years ago
- ☆20Jan 10, 2025Updated last year
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆256Feb 9, 2026Updated 2 weeks ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆43Feb 3, 2023Updated 3 years ago
- Spatiotemporal modeling of spatial transcriptomics☆328Feb 10, 2026Updated 2 weeks ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 3 years ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆416Updated this week
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆73Nov 13, 2025Updated 3 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆167Jan 8, 2026Updated last month
- ☆61Jul 23, 2024Updated last year
- ☆30Oct 4, 2024Updated last year
- A toolkit of spatial transcriptomic analysis.☆273Feb 12, 2026Updated 2 weeks ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆79Jun 24, 2024Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆80Mar 5, 2022Updated 3 years ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Nov 16, 2025Updated 3 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆95Dec 11, 2023Updated 2 years ago
- ☆23Mar 29, 2023Updated 2 years ago
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated 8 months ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- ☆145Apr 19, 2025Updated 10 months ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆240Updated this week
- Mosaic single cell data integration using non-overlapping features☆37Sep 20, 2022Updated 3 years ago
- ☆13Aug 9, 2022Updated 3 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Feb 20, 2025Updated last year
- Spatial Single Cell Analysis in Python☆553Updated this week
- ☆10May 31, 2022Updated 3 years ago
- CellRank: dynamics from multi-view single-cell data☆430Updated this week
- Convert between AnnData and SingleCellExperiment☆144Updated this week
- Mapping the Functional Landscape of TCR Repertoire☆35Oct 8, 2021Updated 4 years ago
- Codes used in LISTA project.☆15Apr 17, 2024Updated last year
- ☆16Sep 13, 2024Updated last year
- ☆15Aug 17, 2023Updated 2 years ago