JinmiaoChenLab / GraphSTLinks
☆138Updated last year
Alternatives and similar repositories for GraphST
Users that are interested in GraphST are comparing it to the libraries listed below
Sorting:
- ☆63Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆76Updated 3 years ago
- Cell clustering for spatial transcriptomics data with graph neural network☆63Updated 2 years ago
- Identify spatial domain☆86Updated 5 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆61Updated 2 years ago
- ☆42Updated last year
- ☆124Updated 3 years ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆243Updated 2 years ago
- ☆60Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆47Updated last year
- ☆39Updated last year
- overview of spatial datasets☆76Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆47Updated 2 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆73Updated last year
- Spatial-Linked Alignment Tool☆89Updated 10 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆71Updated last year
- Multi-omics data analysis for rare population inference using single-cell graph transformer☆21Updated last week
- Single-cell biological network inference using a heterogeneous graph transformer☆76Updated 8 months ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆85Updated last year
- ☆15Updated 2 years ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Updated 2 years ago
- ☆124Updated last year
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆24Updated last year
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆25Updated 8 months ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆29Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆115Updated 7 months ago
- domain adaptation of spatial and single-cell transcriptome☆28Updated last year
- Transformer for One-Stop Interpretable Cell-type Annotation☆144Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆96Updated 8 months ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆153Updated last year