☆164Mar 19, 2024Updated 2 years ago
Alternatives and similar repositories for GraphST
Users that are interested in GraphST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell clustering for spatial transcriptomics data with graph neural network☆67Mar 31, 2023Updated 3 years ago
- Identify spatial domain☆92May 29, 2025Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆87Mar 5, 2022Updated 4 years ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆265Feb 9, 2026Updated 7 months ago
- ☆72Nov 6, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆48May 31, 2024Updated 2 years ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆30Feb 16, 2024Updated 2 years ago
- ☆32Aug 2, 2023Updated 3 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆69Nov 10, 2023Updated 2 years ago
- ☆15Aug 9, 2023Updated 3 years ago
- ☆43Dec 4, 2023Updated 2 years ago
- ☆23Dec 8, 2023Updated 2 years ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆93Jun 24, 2024Updated 2 years ago
- ☆40Nov 17, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆11Sep 7, 2023Updated 3 years ago
- Spatial-Linked Alignment Tool☆95Dec 20, 2024Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆83May 24, 2024Updated 2 years ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆52Apr 8, 2024Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆485Jan 22, 2026Updated 7 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆461Aug 31, 2026Updated 2 weeks ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆259Jul 12, 2026Updated 2 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆95Jul 4, 2026Updated 2 months ago
- BANKSY: spatial clustering☆162May 30, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Spatially resolved transcriptomic analysis☆68Nov 17, 2022Updated 3 years ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 4 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆152Feb 20, 2025Updated last year
- domain adaptation of spatial and single-cell transcriptome☆28Sep 21, 2024Updated last year
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- ☆13Feb 15, 2024Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆54Apr 28, 2023Updated 3 years ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆114Jul 24, 2026Updated last month
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆184Jan 8, 2026Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Spatial alignment of single cell transcriptomic data.☆372Jul 1, 2025Updated last year
- ☆139Jun 10, 2022Updated 4 years ago
- SPROD: Spatial expression profiling de-noising☆36Jun 14, 2023Updated 3 years ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago
- ☆20May 5, 2024Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆38Feb 14, 2025Updated last year
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated 2 years ago