☆14Jan 25, 2023Updated 3 years ago
Alternatives and similar repositories for paste_reproducibility
Users that are interested in paste_reproducibility are comparing it to the libraries listed below
Sorting:
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆101Feb 26, 2025Updated last year
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆25Dec 26, 2023Updated 2 years ago
- Developmental Spatiotemporal Optimal Transport☆13Mar 19, 2025Updated last year
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- ☆43May 31, 2024Updated last year
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆36Mar 30, 2025Updated 11 months ago
- code and dataset for spatialDWLS☆14Apr 18, 2021Updated 4 years ago
- Simulating Sequence Evolution☆11Jul 9, 2024Updated last year
- MERFISH decoding software☆26Aug 16, 2025Updated 7 months ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆70Nov 20, 2023Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Aug 12, 2022Updated 3 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆42Mar 2, 2025Updated last year
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆23May 19, 2025Updated 10 months ago
- The software of Pamona, a partial manifold alignment algorithm.☆21Mar 21, 2021Updated 5 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- ☆29Jan 4, 2024Updated 2 years ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated last year
- A novel method for single-cell diagonal integration: scConfluence☆26Nov 3, 2025Updated 4 months ago
- IntegrateNet: A Deep learning Network for maize Stand Counting from UAV Imagery by Integrating Density and Local Count Maps.☆12Apr 15, 2022Updated 3 years ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆12Dec 15, 2025Updated 3 months ago
- Spatial-Linked Alignment Tool☆90Dec 20, 2024Updated last year
- A toolkit for automated local phylogenomic analyses, or ALPHA☆12Oct 23, 2019Updated 6 years ago
- pliman R package☆18Feb 16, 2026Updated last month
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- ☆61Jul 23, 2024Updated last year
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆11Jul 11, 2024Updated last year
- Scripts from the GBM cellular states paper☆20Feb 24, 2021Updated 5 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- Python implementation of the supervised graph prediction method proposed in http://arxiv.org/abs/2202.03813 using PyTorch library and POT…☆16Feb 25, 2022Updated 4 years ago
- LibMVC is a collection of fast iterative minimum vertex cover solvers. Currently NuMVC and FastVC are implemented.☆12Jun 14, 2022Updated 3 years ago
- EDF solves the multi-view features fusion problem by searching an optimal combination scheme of different basic fusion operators.☆10Jan 23, 2022Updated 4 years ago
- tutorials for spateo package☆20Dec 25, 2024Updated last year
- Multi-Layer Network Model leverages identification of spatial domains from spatial transcriptomics data☆12Aug 25, 2024Updated last year
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- cTPnet Package☆27Jul 12, 2022Updated 3 years ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆50Apr 8, 2024Updated last year
- ☆10Sep 7, 2023Updated 2 years ago
- Bayesian Analytics for Spatial Segmentation☆30May 4, 2025Updated 10 months ago