☆14Jan 25, 2023Updated 3 years ago
Alternatives and similar repositories for paste_reproducibility
Users that are interested in paste_reproducibility are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆103Feb 26, 2025Updated last year
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆26Dec 26, 2023Updated 2 years ago
- Developmental Spatiotemporal Optimal Transport☆14Mar 19, 2025Updated last year
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- ☆47May 31, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- TOAST: Spatially Aware Optimal Transport for Alignment of Spatial Omics Data☆15Apr 9, 2026Updated 3 months ago
- code and dataset for spatialDWLS☆14Apr 18, 2021Updated 5 years ago
- Simulating Sequence Evolution☆10Jul 9, 2024Updated 2 years ago
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆27Dec 19, 2024Updated last year
- The software of Pamona, a partial manifold alignment algorithm.☆23Mar 21, 2021Updated 5 years ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆72Nov 20, 2023Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Jul 13, 2026Updated last week
- MERFISH decoding software☆27Aug 16, 2025Updated 11 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆44Mar 2, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆25Updated this week
- ☆29Jan 4, 2024Updated 2 years ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- IntegrateNet: A Deep learning Network for maize Stand Counting from UAV Imagery by Integrating Density and Local Count Maps.☆12Apr 15, 2022Updated 4 years ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆15Dec 15, 2025Updated 7 months ago
- A novel method for single-cell diagonal integration: scConfluence☆28Nov 3, 2025Updated 8 months ago
- Spatial-Linked Alignment Tool☆94Dec 20, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A toolkit for automated local phylogenomic analyses, or ALPHA☆12Oct 23, 2019Updated 6 years ago
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- ☆63Jul 23, 2024Updated last year
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 4 years ago
- tutorials for spateo package☆21Dec 25, 2024Updated last year
- 总结和比较目前发表的处理单细胞空间转录组学(Spatial Transcriptomic)的聚类方法。Conclusion and comparison of the current clustering method for ST data.☆12May 31, 2023Updated 3 years ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆92Jun 24, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Label-free measurement of density and anisotropy from polarization-resolved images☆12Jun 4, 2023Updated 3 years ago
- Multi-Layer Network Model leverages identification of spatial domains from spatial transcriptomics data☆13Aug 25, 2024Updated last year
- cTPnet Package☆27Jul 12, 2022Updated 4 years ago
- Python implementation of the supervised graph prediction method proposed in http://arxiv.org/abs/2202.03813 using PyTorch library and POT…☆15Feb 25, 2022Updated 4 years ago
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆43Mar 30, 2025Updated last year
- LibMVC is a collection of fast iterative minimum vertex cover solvers. Currently NuMVC and FastVC are implemented.☆12Jun 14, 2022Updated 4 years ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆53Apr 8, 2024Updated 2 years ago