COSMOS is a computational tool crafted to overcome the challenges associated with integrating spatially resolved multi-omics data. This software harnesses a graph neural network algorithm to deliver cutting-edge solutions for analyzing biological data that encompasses various omics types within a spatial framework.
☆13Nov 12, 2024Updated last year
Alternatives and similar repositories for COSMOS
Users that are interested in COSMOS are comparing it to the libraries listed below
Sorting:
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆79Jun 24, 2024Updated last year
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆20Oct 7, 2021Updated 4 years ago
- ☆15Nov 11, 2025Updated 3 months ago
- ☆33Jan 17, 2025Updated last year
- ☆12Feb 16, 2025Updated last year
- Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks☆17Updated this week
- A deep model infers gene regulation networks from scRNA-seq data.☆12Aug 1, 2024Updated last year
- Dependency-aware deep generative models for multitasking analysis of spatial genomics data☆41Jul 10, 2024Updated last year
- A General Quantum Software☆17Updated this week
- ☆12Jun 21, 2025Updated 8 months ago
- ☆14Feb 5, 2025Updated last year
- MetaFX – library for feature extraction from whole-genome metagenome sequencing data☆16Updated this week
- [AAAI 2025] M2OST: Many-to-one Regression for Predicting Spatial Transcriptomics from Digital Pathology Images☆14Dec 1, 2025Updated 3 months ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 5 years ago
- Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification o…☆13May 10, 2025Updated 9 months ago
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11Dec 27, 2024Updated last year
- ☆16Nov 5, 2024Updated last year
- Cellular content mining and particle localization☆10Sep 21, 2025Updated 5 months ago
- ☆11Sep 7, 2023Updated 2 years ago
- ☆11Jan 12, 2024Updated 2 years ago
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated 7 months ago
- Multimodal Compact Bilinear Pooling class in Python☆11Sep 17, 2019Updated 6 years ago
- An Open Source implementation of Notebook LM.☆32Feb 15, 2026Updated 2 weeks ago
- ☆11Feb 19, 2024Updated 2 years ago
- Source code of Venus-MAXWELL: Efficient Learning of Protein-Mutation Stability Landscapes using Protein Language Models☆23Jun 3, 2025Updated 8 months ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆15Nov 10, 2025Updated 3 months ago
- Benchmarking scripts for Gaia☆14Apr 10, 2025Updated 10 months ago
- This is a repository containing code for a hybrid quantum-classical transformer model from the paper: A Hybrid Transformer Architecture w…☆20Mar 6, 2025Updated 11 months ago
- protein folding app running on modal☆17Updated this week
- Lung cancer 10X analysis☆11Dec 30, 2020Updated 5 years ago
- 图神经网络课程——图注意力网络☆11Dec 28, 2019Updated 6 years ago
- Official implementation of CP-Composer. It is the released code of 《Zero-Shot Cyclic Peptide Design via Composable Geometric Constraints》…☆23Aug 6, 2025Updated 6 months ago
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆17Feb 4, 2026Updated 3 weeks ago
- Official PyTorch implementation of "ProteinMAE: Masked Autoencoder for Protein Surface Self-supervised Learning".☆16May 7, 2024Updated last year
- Chat offline with open-source LLMs like deepseek-r1, nemotron, qwen, llama and more all through a simple R package powered by Shiny and O…☆21Mar 12, 2025Updated 11 months ago
- OUC&HW计科中外“宝宝”👶生存指南 | OUC-HW-Survial-Guidance☆21Feb 9, 2026Updated 2 weeks ago
- MGnify documentation and Jupyter Lab notebooks to support downstream analysis of MGnify data (EMBL-EBI's metagenomics platform)☆15Jul 31, 2025Updated 7 months ago
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated last year
- ☆13Sep 30, 2024Updated last year