caokai1073 / uniPortLinks
a unified single-cell data integration framework by optimal transport
☆34Updated last year
Alternatives and similar repositories for uniPort
Users that are interested in uniPort are comparing it to the libraries listed below
Sorting:
- Single-cell biological network inference using a heterogeneous graph transformer☆76Updated 10 months ago
- Identify spatial domain☆87Updated 7 months ago
- scDCC: Single Cell Deep Constrained Clustering☆43Updated last year
- Single-cell spatial elucidation through image-augmented graph transformer☆34Updated 2 years ago
- ☆67Updated 5 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆75Updated last year
- A model developed for the generation of scRNA-seq data☆81Updated 10 months ago
- ☆18Updated 4 years ago
- Single-Cell Multimodal Prediction via Transformer☆28Updated last year
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆154Updated last year
- ☆87Updated 2 years ago
- Cell clustering for spatial transcriptomics data with graph neural network☆64Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆75Updated last year
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆15Updated 4 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆49Updated 2 years ago
- ☆32Updated 11 months ago
- Pytorch implementation of scDeepCluster for Single Cell RNA-seq data☆33Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆139Updated last month
- CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis☆35Updated 3 years ago
- ☆64Updated last year
- Modeling complex perturbations with CellFlow☆104Updated last week
- ☆42Updated last year
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Updated 2 years ago
- ☆41Updated 2 years ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆100Updated last year
- ☆96Updated last month
- ☆144Updated last year
- Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis☆54Updated 6 months ago
- Deep joint-leaning single-cell multi-omics model☆15Updated 3 years ago