Alternatives and similar repositories for uniPort

Users that are interested in uniPort are comparing it to the libraries listed below

• JiangBioLab / DeepST
  Identify spatial domain
  ☆77Updated last month
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆94Updated 3 months ago
• JinmiaoChenLab / GraphST
  ☆124Updated last year
• wehos / CellT
  An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"
  ☆17Updated last year
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆67Updated last year
• HantaoShu / DeepSEM
  ☆82Updated 2 years ago
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆73Updated 4 months ago
• QIFEIDKN / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆46Updated 2 years ago
• OmicsML / scMoFormer
  Single-Cell Multimodal Prediction via Transformer
  ☆28Updated last year
• JinmiaoChenLab / SEDR_analyses
  ☆39Updated last year
• kodaim1115 / scMM
  ☆17Updated 3 years ago
• zhaofangyuan98 / SDMBench
  ☆39Updated last year
• ys-zong / conST
  conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics
  ☆27Updated last year
• JinmiaoChenLab / SEDR
  ☆60Updated 8 months ago
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆63Updated 2 years ago
• ml4bio / CLEAR
  CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis
  ☆33Updated 2 years ago
• cmzuo11 / scMVAE
  Deep joint-leaning single-cell multi-omics model
  ☆16Updated 3 years ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆67Updated 4 months ago
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆28Updated 11 months ago
• kpcoleman / miso
  ☆25Updated 5 months ago
• ttgump / scDeepCluster_pytorch
  Pytorch implementation of scDeepCluster for Single Cell RNA-seq data
  ☆33Updated last year
• yhr91 / GEARS_misc
  ☆19Updated 9 months ago
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆64Updated last year
• ttgump / scDeepCluster
  scDeepCluster for Single Cell RNA-seq data
  ☆101Updated last year
• QSong-github / SiGra
  Single-cell spatial elucidation through image-augmented graph transformer
  ☆32Updated 2 years ago
• ttgump / scDCC
  scDCC: Single Cell Deep Constrained Clustering
  ☆40Updated last year
• jianhuupenn / ItClust
  Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis
  ☆54Updated last month
• zhanglabtools / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆73Updated 3 years ago
• mcgilldinglab / scCross
  A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…
  ☆15Updated 4 months ago
• QIFEIDKN / STAGATE_pyG
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…
  ☆57Updated last year