STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
☆51Apr 8, 2024Updated 2 years ago
Alternatives and similar repositories for STAligner
Users that are interested in STAligner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆26Dec 26, 2023Updated 2 years ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆29Feb 16, 2024Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆51Apr 28, 2023Updated 3 years ago
- ☆62Jul 23, 2024Updated last year
- tutorials for spateo package☆20Dec 25, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆14Jan 25, 2023Updated 3 years ago
- ☆154Mar 19, 2024Updated 2 years ago
- Spatial-Linked Alignment Tool☆92Dec 20, 2024Updated last year
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆25Dec 19, 2024Updated last year
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- ☆13Nov 3, 2023Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆68Nov 10, 2023Updated 2 years ago
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆31Mar 26, 2026Updated last month
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆40Mar 30, 2025Updated last year
- [ICML 2025] Code for SUICA: Learning Super-high Dimensional Sparse Implicit Neural Representations for Spatial Transcriptomics.☆20Nov 22, 2025Updated 5 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆44Feb 19, 2026Updated 2 months ago
- ☆25Apr 22, 2026Updated last week
- Nextflow workshop materials November 2025☆18Mar 14, 2026Updated last month
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- Multiple trajectory alignment of time-series data☆13Oct 14, 2023Updated 2 years ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆22May 16, 2025Updated 11 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆19May 5, 2024Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆84Mar 5, 2022Updated 4 years ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 2 years ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆245Updated this week
- ☆15Jun 27, 2025Updated 10 months ago
- ☆19Jul 22, 2025Updated 9 months ago
- ☆15Aug 9, 2023Updated 2 years ago
- Dynamic inference from single-cell snapshots by optimal transport☆20Mar 14, 2024Updated 2 years ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆112Mar 27, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Methods for visualization and analysis of spatially-resolved gene expression☆23Mar 19, 2026Updated last month
- A Toolbox for Spatial Transcriptomics Analysis☆166May 6, 2025Updated 11 months ago
- Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data☆19Aug 7, 2024Updated last year
- Top1 Solution on OGB Challenge (Graph Property Prediction on HIV dataset)☆10Oct 20, 2021Updated 4 years ago
- ☆14Jun 10, 2025Updated 10 months ago
- shifts hg19/38 genomic position for feasible input format.☆12Jun 8, 2023Updated 2 years ago
- ☆67Nov 6, 2024Updated last year