STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
☆53Apr 8, 2024Updated 2 years ago
Alternatives and similar repositories for STAligner
Users that are interested in STAligner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆26Dec 26, 2023Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆55Apr 28, 2023Updated 3 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆69Nov 10, 2023Updated 2 years ago
- Spatial-Linked Alignment Tool☆95Dec 20, 2024Updated last year
- ☆65Jul 23, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆30Feb 16, 2024Updated 2 years ago
- ☆163Mar 19, 2024Updated 2 years ago
- ☆14Jun 10, 2025Updated last year
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆43Mar 30, 2025Updated last year
- SpotGF: Denoising Spatially Resolved Transcriptomics Data Using an Optimal Transport-Based Gene Filtering Algorithm☆21Apr 8, 2025Updated last year
- Code for the spatialLIBD R/Bioconductor package and shiny app☆113Jul 24, 2026Updated last month
- tutorials for spateo package☆21Dec 25, 2024Updated last year
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆29Dec 19, 2024Updated last year
- Repository for the tutorials of STARNet, a computational framework designed to decipher spatially specific gene regulatory networks (GRNs…☆15Jun 9, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- ☆13Nov 3, 2023Updated 2 years ago
- spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples☆33Aug 14, 2026Updated 2 weeks ago
- ☆14Jan 25, 2023Updated 3 years ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 4 years ago
- Test genes for Spatial Variation☆189May 7, 2024Updated 2 years ago
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Jul 7, 2026Updated last month
- Spatiotemporal modeling of spatial transcriptomics☆343Feb 25, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A novel machine learning pipeline to analyse spatial transcriptomics data☆257Jul 12, 2026Updated last month
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆72Nov 20, 2023Updated 2 years ago
- A Toolbox for Spatial Transcriptomics Analysis☆173May 6, 2025Updated last year
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆30Jul 22, 2024Updated 2 years ago
- ☆45May 23, 2025Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆106Dec 11, 2023Updated 2 years ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- Nextflow workshop materials November 2025☆19Aug 15, 2026Updated 2 weeks ago
- ☆16Jan 24, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆47Feb 19, 2026Updated 6 months ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆21Oct 7, 2021Updated 4 years ago
- ☆145Jun 25, 2026Updated 2 months ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆477Feb 9, 2026Updated 6 months ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆15Nov 7, 2024Updated last year
- Reproducible analyses for the NicheCompass manuscript☆14Updated this week
- Multiple trajectory alignment of time-series data☆14Oct 14, 2023Updated 2 years ago