zhoux85 / STAligner
STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
☆35Updated 11 months ago
Alternatives and similar repositories for STAligner:
Users that are interested in STAligner are comparing it to the libraries listed below
- ☆55Updated 8 months ago
- Spatial-Linked Alignment Tool☆84Updated 3 months ago
- overview of spatial datasets☆71Updated last year
- Cell clustering for spatial transcriptomics data with graph neural network☆59Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆33Updated 8 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- ☆45Updated last week
- ☆53Updated 4 months ago
- ☆38Updated 2 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆61Updated 9 months ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆23Updated last week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆35Updated this week
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆38Updated 2 years ago
- ☆109Updated last year
- domain adaptation of spatial and single-cell transcriptome☆26Updated 6 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆62Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆87Updated 3 weeks ago
- Spatial direct messaging detected by bivariate Moran☆25Updated 2 months ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆91Updated this week
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆66Updated 2 months ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆77Updated 9 months ago
- ☆42Updated 3 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆33Updated last month
- Additional code and analysis from the single-cell integration benchmarking project☆59Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆43Updated last year
- ☆42Updated 2 weeks ago
- Bayesian Analytics for Spatial Segmentation☆25Updated 5 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 3 weeks ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆31Updated last month