zhoux85 / STAlignerLinks
STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
☆50Updated last year
Alternatives and similar repositories for STAligner
Users that are interested in STAligner are comparing it to the libraries listed below
Sorting:
- ☆60Updated last year
- overview of spatial datasets☆76Updated last year
- End-to-end analysis of spatial multi-omics data☆101Updated 2 months ago
- Spatial-Linked Alignment Tool☆90Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆79Updated 3 years ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆25Updated 10 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆76Updated last year
- ☆128Updated 3 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆40Updated last year
- ☆145Updated last year
- ☆66Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆76Updated last year
- ☆127Updated last year
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆69Updated 2 years ago
- ☆40Updated 3 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆49Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆62Updated 2 years ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆91Updated last year
- Code for the spatialLIBD R/Bioconductor package and shiny app☆108Updated this week
- ☆52Updated 3 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆128Updated 7 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆72Updated 2 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆147Updated last month
- ☆57Updated last year
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Updated 2 years ago
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆25Updated 2 years ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆26Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆98Updated 10 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- Cell clustering for spatial transcriptomics data with graph neural network☆64Updated 2 years ago