zhoux85 / STAligner
STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
☆31Updated 9 months ago
Alternatives and similar repositories for STAligner:
Users that are interested in STAligner are comparing it to the libraries listed below
- ☆51Updated 5 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆30Updated 6 months ago
- Cell clustering for spatial transcriptomics data with graph neural network☆59Updated last year
- overview of spatial datasets☆69Updated 10 months ago
- ☆36Updated 2 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆37Updated 2 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- ☆49Updated 2 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆45Updated 6 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆21Updated 4 months ago
- Spatial direct messaging detected by bivariate Moran☆24Updated this week
- ☆24Updated last year
- domain adaptation of spatial and single-cell transcriptome☆25Updated 3 months ago
- ☆43Updated 3 months ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆62Updated 2 months ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆22Updated last year
- Spatial-Linked Alignment Tool☆84Updated 3 weeks ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆42Updated last year
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆11Updated 9 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆56Updated 2 years ago
- ☆40Updated 11 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆31Updated 8 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆30Updated 6 months ago
- ☆16Updated this week
- Bayesian Analytics for Spatial Segmentation☆22Updated 3 months ago
- The benchmarking of spatial transcriptomics deconvolution methods☆26Updated last year
- ☆29Updated 7 months ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆59Updated last year
- ☆83Updated 2 weeks ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆22Updated 2 months ago