zhoux85 / STAligner
STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
☆29Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for STAligner
- ☆49Updated 3 months ago
- overview of spatial datasets☆69Updated 9 months ago
- Cell clustering for spatial transcriptomics data with graph neural network☆58Updated last year
- ☆34Updated 2 years ago
- ☆45Updated 2 weeks ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆31Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆28Updated 4 months ago
- Spatial-Linked Alignment Tool☆81Updated 5 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆63Updated 2 years ago
- ☆28Updated last year
- ☆79Updated last week
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆46Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆38Updated last year
- domain adaptation of spatial and single-cell transcriptome☆24Updated 2 months ago
- ☆91Updated 8 months ago
- ☆25Updated 5 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆55Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆53Updated 5 months ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆62Updated 2 weeks ago
- ☆98Updated 6 months ago
- Single-cell biological network inference using a heterogeneous graph transformer☆67Updated last year
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆17Updated last month
- Spatial direct messaging detected by bivariate Moran☆24Updated last week
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Updated 2 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆34Updated 2 years ago
- ☆21Updated last year
- ☆30Updated 10 months ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆28Updated last week
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆71Updated 5 months ago
- Bayesian Analytics for Spatial Segmentation☆21Updated last month