zhoux85 / STAlignerLinks
STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
☆46Updated last year
Alternatives and similar repositories for STAligner
Users that are interested in STAligner are comparing it to the libraries listed below
Sorting:
- overview of spatial datasets☆76Updated last year
- ☆59Updated last year
- Spatial-Linked Alignment Tool☆88Updated 9 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆75Updated 3 years ago
- End-to-end analysis of spatial multi-omics data☆93Updated last month
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆84Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆37Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆48Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆94Updated 7 months ago
- ☆122Updated 3 years ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆25Updated 6 months ago
- ☆62Updated 2 months ago
- ☆13Updated 3 months ago
- ☆123Updated last year
- ☆61Updated 11 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆59Updated last year
- Code for the spatialLIBD R/Bioconductor package and shiny app☆96Updated last week
- ☆134Updated last year
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆69Updated last year
- Single-cell biological network inference using a heterogeneous graph transformer☆76Updated 7 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆25Updated 11 months ago
- ☆51Updated 4 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆73Updated last year
- ☆40Updated 2 years ago
- Bayesian Analytics for Spatial Segmentation☆29Updated 5 months ago
- Cell clustering for spatial transcriptomics data with graph neural network☆63Updated 2 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆72Updated 8 months ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆67Updated last year
- ☆30Updated 2 years ago