zhoux85 / STAligner
STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
☆39Updated last year
Alternatives and similar repositories for STAligner:
Users that are interested in STAligner are comparing it to the libraries listed below
- ☆56Updated 9 months ago
- ☆38Updated 2 years ago
- overview of spatial datasets☆75Updated last year
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆24Updated last month
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆34Updated 10 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆45Updated 2 years ago
- Cell clustering for spatial transcriptomics data with graph neural network☆61Updated 2 years ago
- ☆48Updated last month
- domain adaptation of spatial and single-cell transcriptome☆27Updated 7 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- Bayesian Analytics for Spatial Segmentation☆27Updated 6 months ago
- The benchmarking of spatial transcriptomics deconvolution methods☆30Updated 2 years ago
- Spatial direct messaging detected by bivariate Moran☆26Updated this week
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆73Updated 3 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆70Updated 3 months ago
- ☆27Updated last year
- ☆28Updated 2 months ago
- ☆115Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆63Updated 11 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆57Updated 10 months ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆9Updated last year
- ☆47Updated 4 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 2 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆61Updated 2 years ago
- ☆114Updated last year
- Spatial-Linked Alignment Tool☆86Updated 4 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆24Updated 6 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆77Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆38Updated 2 years ago
- Code used to benchmark Xenium☆57Updated 10 months ago