☆139Jun 10, 2022Updated 4 years ago
Alternatives and similar repositories for SpatialBenchmarking
Users that are interested in SpatialBenchmarking are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Aug 16, 2022Updated 4 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆43Jul 1, 2024Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆152Feb 20, 2025Updated last year
- Spatial alignment of single cell transcriptomic data.☆373Jul 1, 2025Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆488Jan 22, 2026Updated 8 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆65Jul 23, 2024Updated 2 years ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆133May 29, 2025Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆83May 24, 2024Updated 2 years ago
- ☆136Aug 23, 2026Updated last month
- code and dataset for spatialDWLS☆14Apr 18, 2021Updated 5 years ago
- ☆137Feb 11, 2024Updated 2 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆34Feb 24, 2023Updated 3 years ago
- ☆175Dec 20, 2024Updated last year
- Identify spatial domain☆92May 29, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A novel machine learning pipeline to analyse spatial transcriptomics data☆259Updated this week
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆30Feb 16, 2024Updated 2 years ago
- A unified framework for identifying multicellular niches and niche-regulated cell states from spatial transcriptomics data.☆17Aug 3, 2026Updated 2 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆69Nov 10, 2023Updated 2 years ago
- ☆72Nov 6, 2024Updated last year
- ☆57Sep 2, 2026Updated last month
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆189Jan 8, 2026Updated 9 months ago
- ☆164Mar 19, 2024Updated 2 years ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆265Feb 9, 2026Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆40Aug 11, 2022Updated 4 years ago
- ☆24Mar 29, 2023Updated 3 years ago
- Spatial direct messaging detected by bivariate Moran☆33Jul 16, 2025Updated last year
- Spatial mapping of cell types by integration of transcriptomics data☆103Apr 25, 2026Updated 5 months ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆97Mar 26, 2026Updated 6 months ago
- ☆15Feb 28, 2022Updated 4 years ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆159Aug 3, 2025Updated last year
- Spatial-Linked Alignment Tool☆95Dec 20, 2024Updated last year
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆463Sep 28, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Interactive applications of stlearn☆16May 1, 2023Updated 3 years ago
- ☆10Jun 1, 2026Updated 4 months ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆114Sep 29, 2026Updated last week
- ☆21Jun 29, 2022Updated 4 years ago
- ☆15Feb 28, 2022Updated 4 years ago
- ☆53Apr 1, 2021Updated 5 years ago
- Spatial Transcriptomics Capture Location Deconvolution☆214Oct 20, 2025Updated 11 months ago