Alternatives and similar repositories for SpatialBenchmarking

Users that are interested in SpatialBenchmarking are comparing it to the libraries listed below

• QuKunLab / SPACEL
  ☆60Updated last year
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆125Updated 6 months ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆74Updated last year
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆48Updated last year
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆76Updated last year
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆96Updated 9 months ago
• zcang / COMMOT
  ☆125Updated last year
• gao-lab / SLAT
  Spatial-Linked Alignment Tool
  ☆89Updated 11 months ago
• zhanglabtools / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆77Updated 3 years ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆39Updated last year
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆146Updated last year
• YMa-lab / CARD
  ☆128Updated last year
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆28Updated last year
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆97Updated last month
• LieberInstitute / HumanPilot
  Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
  ☆86Updated last year
• LieberInstitute / spatialLIBD
  Code for the spatialLIBD R/Bioconductor package and shiny app
  ☆104Updated last week
• JinmiaoChenLab / GraphST
  ☆139Updated last year
• CSOgroup / cellcharter
  A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
  ☆144Updated last week
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆64Updated 2 years ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆69Updated 2 years ago
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆74Updated 2 years ago
• JinmiaoChenLab / SEDR
  ☆64Updated last year
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆136Updated 9 months ago
• TencentAILabHealthcare / spatialID
  ☆40Updated 3 years ago
• ZJUFanLab / SpaTalk
  Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
  ☆72Updated 10 months ago
• SydneyBioX / scJoint
  ☆61Updated 2 years ago
• QIFEIDKN / STAGATE_pyG
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…
  ☆61Updated 2 years ago
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆71Updated last year
• LewisLabUCSD / Ligand-Receptor-Pairs
  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
  ☆145Updated 2 years ago
• Durenlab / LINGER
  ☆119Updated 6 months ago