QuKunLab / SpatialBenchmarkingLinks
☆129Updated 3 years ago
Alternatives and similar repositories for SpatialBenchmarking
Users that are interested in SpatialBenchmarking are comparing it to the libraries listed below
Sorting:
- ☆60Updated last year
- overview of spatial datasets☆78Updated last year
- Spatial-Linked Alignment Tool☆90Updated last year
- ☆129Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆128Updated 8 months ago
- ☆129Updated last year
- ☆145Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆77Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆99Updated 11 months ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆50Updated last year
- Code for the spatialLIBD R/Bioconductor package and shiny app☆107Updated 2 weeks ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- ☆66Updated last year
- End-to-end analysis of spatial multi-omics data☆102Updated last week
- domain adaptation of spatial and single-cell transcriptome☆28Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆149Updated 2 weeks ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆91Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆79Updated 3 years ago
- Cell clustering for spatial transcriptomics data with graph neural network☆64Updated 2 years ago
- ☆40Updated 3 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Updated 11 months ago
- ☆62Updated 2 years ago
- ☆52Updated 3 months ago
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆25Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆75Updated last year
- ☆43Updated 8 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆100Updated 3 years ago