Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framework)
☆69Nov 10, 2023Updated 2 years ago
Alternatives and similar repositories for STAGATE_pyG
Users that are interested in STAGATE_pyG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆51Apr 28, 2023Updated 3 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆84Mar 5, 2022Updated 4 years ago
- ☆156Mar 19, 2024Updated 2 years ago
- Cell clustering for spatial transcriptomics data with graph neural network☆66Mar 31, 2023Updated 3 years ago
- ☆15Aug 9, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆68Nov 6, 2024Updated last year
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 2 years ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆261Feb 9, 2026Updated 3 months ago
- Identify spatial domain☆92May 29, 2025Updated 11 months ago
- ☆41Dec 4, 2023Updated 2 years ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆112May 7, 2026Updated 2 weeks ago
- ☆13Feb 15, 2024Updated 2 years ago
- ☆31Aug 2, 2023Updated 2 years ago
- Reproducible analyses for the NicheCompass manuscript☆14Jul 3, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆40Aug 11, 2022Updated 3 years ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆97Mar 26, 2026Updated last month
- ☆46May 31, 2024Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆51Apr 8, 2024Updated 2 years ago
- ☆131Jun 10, 2022Updated 3 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆130Updated this week
- Spatial-Linked Alignment Tool☆92Dec 20, 2024Updated last year
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆25Dec 19, 2024Updated last year
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆179Jan 8, 2026Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Test genes for Spatial Variation☆185May 7, 2024Updated 2 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- ☆62Jul 23, 2024Updated last year
- A VGAE-based model to infer transcription factor regulatory network☆29Jul 25, 2022Updated 3 years ago
- ☆11Sep 7, 2023Updated 2 years ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆71Nov 20, 2023Updated 2 years ago
- ☆12Aug 16, 2022Updated 3 years ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 3 years ago
- Counterfactual generation of tumor perturbations from multiplexed tissue images☆25May 13, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆29Feb 16, 2024Updated 2 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- [ICML 2025] Code for SUICA: Learning Super-high Dimensional Sparse Implicit Neural Representations for Spatial Transcriptomics.☆20Nov 22, 2025Updated 6 months ago
- ☆15Jun 17, 2021Updated 4 years ago
- Multi-omics data analysis for rare population inference using single-cell graph transformer☆23Nov 5, 2025Updated 6 months ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆27Jul 26, 2023Updated 2 years ago
- CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis☆34Nov 30, 2022Updated 3 years ago