SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
☆265Feb 9, 2026Updated 8 months ago
Alternatives and similar repositories for SpaGCN
Users that are interested in SpaGCN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆165Mar 19, 2024Updated 2 years ago
- ☆43Dec 4, 2023Updated 2 years ago
- ☆72Nov 6, 2024Updated last year
- Identify spatial domain☆92May 29, 2025Updated last year
- Cell clustering for spatial transcriptomics data with graph neural network☆67Mar 31, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆89Mar 5, 2022Updated 4 years ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆30Feb 16, 2024Updated 2 years ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆114Oct 8, 2026Updated last week
- ☆33Aug 2, 2023Updated 3 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆69Nov 10, 2023Updated 2 years ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆261Updated this week
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆55Apr 28, 2023Updated 3 years ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆97Mar 26, 2026Updated 6 months ago
- Spatial alignment of single cell transcriptomic data.☆373Jul 1, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Her2 Breast Cancer Project☆111Nov 27, 2022Updated 3 years ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆462Updated this week
- Test genes for Spatial Variation☆192May 7, 2024Updated 2 years ago
- Spatial-Linked Alignment Tool☆96Dec 20, 2024Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆105Feb 26, 2025Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆134May 29, 2025Updated last year
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆190Jan 8, 2026Updated 9 months ago
- ☆13Feb 15, 2024Updated 2 years ago
- A toolkit of spatial transcriptomic analysis.☆295Jul 17, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Spatial Single Cell Analysis in Python☆608Updated this week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 11 months ago
- ☆139Jun 10, 2022Updated 4 years ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆69Mar 18, 2024Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆489Jan 22, 2026Updated 8 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆153Feb 20, 2025Updated last year
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆29Dec 19, 2024Updated last year
- Spatial mapping of cell types by integration of transcriptomics data☆104Apr 25, 2026Updated 5 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆71Oct 1, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆23Dec 8, 2023Updated 2 years ago
- spatial transcriptome, single cell☆77Mar 18, 2023Updated 3 years ago
- Spatial RNA velocity☆11Oct 3, 2024Updated 2 years ago
- ☆53Apr 1, 2021Updated 5 years ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 3 years ago
- Deep learning on histopathology images.☆150Sep 8, 2021Updated 5 years ago
- ☆175Dec 20, 2024Updated last year