Alternatives and similar repositories for SpaGCN

Users that are interested in SpaGCN are comparing it to the libraries listed below

• JinmiaoChenLab / GraphST
  ☆145Updated last year
• daviddaiweizhang / istar
  ☆158Updated last year
• JinmiaoChenLab / SEDR
  ☆66Updated last year
• QuKunLab / SpatialBenchmarking
  ☆129Updated 3 years ago
• JiangBioLab / DeepST
  Identify spatial domain
  ☆88Updated 8 months ago
• LieberInstitute / HumanPilot
  Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
  ☆91Updated last year
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆73Updated 2 years ago
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆64Updated 2 years ago
• JinmiaoChenLab / SEDR_analyses
  ☆41Updated 2 years ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆77Updated last year
• gao-lab / SLAT
  Spatial-Linked Alignment Tool
  ☆90Updated last year
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆99Updated 11 months ago
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆128Updated 8 months ago
• zhanglabtools / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆79Updated 3 years ago
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆76Updated last year
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆50Updated last year
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆68Updated 2 years ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆145Updated 2 months ago
• almaan / her2st
  Her2 Breast Cancer Project
  ☆92Updated 3 years ago
• BiomedicalMachineLearning / stLearn
  A novel machine learning pipeline to analyse spatial transcriptomics data
  ☆238Updated 3 weeks ago
• wehos / CellT
  An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"
  ☆18Updated 2 years ago
• QuKunLab / SPACEL
  ☆60Updated last year
• zcang / COMMOT
  ☆128Updated last year
• broadinstitute / Tangram
  Spatial alignment of single cell transcriptomic data.
  ☆352Updated 6 months ago
• kpcoleman / miso
  ☆33Updated last year
• bowang-lab / scGPT-spatial
  ☆124Updated 11 months ago
• zhaofangyuan98 / SDMBench
  ☆42Updated last year
• uhlerlab / cross-modal-autoencoders
  ☆56Updated 3 years ago
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆68Updated 2 months ago
• CaiGroup / seqFISH-PLUS
  ☆53Updated 4 years ago