SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
☆264Feb 9, 2026Updated 6 months ago
Alternatives and similar repositories for SpaGCN
Users that are interested in SpaGCN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆163Mar 19, 2024Updated 2 years ago
- ☆42Dec 4, 2023Updated 2 years ago
- ☆72Nov 6, 2024Updated last year
- Identify spatial domain☆92May 29, 2025Updated last year
- Cell clustering for spatial transcriptomics data with graph neural network☆67Mar 31, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆87Mar 5, 2022Updated 4 years ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆30Feb 16, 2024Updated 2 years ago
- ☆32Aug 2, 2023Updated 3 years ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆113Jul 24, 2026Updated last month
- A novel machine learning pipeline to analyse spatial transcriptomics data☆257Jul 12, 2026Updated last month
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆69Nov 10, 2023Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆54Apr 28, 2023Updated 3 years ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆96Mar 26, 2026Updated 5 months ago
- Spatial alignment of single cell transcriptomic data.☆372Jul 1, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Test genes for Spatial Variation☆189May 7, 2024Updated 2 years ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆461Aug 31, 2026Updated last week
- Her2 Breast Cancer Project☆107Nov 27, 2022Updated 3 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆104Feb 26, 2025Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆133May 29, 2025Updated last year
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆184Jan 8, 2026Updated 7 months ago
- Spatial-Linked Alignment Tool☆95Dec 20, 2024Updated last year
- ☆13Feb 15, 2024Updated 2 years ago
- A toolkit of spatial transcriptomic analysis.☆291Jul 17, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 9 months ago
- Spatial Single Cell Analysis in Python☆596Updated this week
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆68Mar 18, 2024Updated 2 years ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆485Jan 22, 2026Updated 7 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆151Feb 20, 2025Updated last year
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆29Dec 19, 2024Updated last year
- ☆138Jun 10, 2022Updated 4 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆103Apr 25, 2026Updated 4 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆71Oct 1, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- spatial transcriptome, single cell☆77Mar 18, 2023Updated 3 years ago
- ☆23Dec 8, 2023Updated 2 years ago
- ☆10Nov 29, 2022Updated 3 years ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 3 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Deep learning on histopathology images.☆148Sep 8, 2021Updated 4 years ago
- ☆172Dec 20, 2024Updated last year