SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network
☆261Feb 9, 2026Updated 3 months ago
Alternatives and similar repositories for SpaGCN
Users that are interested in SpaGCN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆157Mar 19, 2024Updated 2 years ago
- ☆41Dec 4, 2023Updated 2 years ago
- ☆68Nov 6, 2024Updated last year
- Identify spatial domain☆92May 29, 2025Updated last year
- Cell clustering for spatial transcriptomics data with graph neural network☆66Mar 31, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆84Mar 5, 2022Updated 4 years ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆29Feb 16, 2024Updated 2 years ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆113May 20, 2026Updated last week
- ☆31Aug 2, 2023Updated 2 years ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆248May 5, 2026Updated 3 weeks ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆69Nov 10, 2023Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆51Apr 28, 2023Updated 3 years ago
- Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project☆97Mar 26, 2026Updated 2 months ago
- Spatial alignment of single cell transcriptomic data.☆366Jul 1, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆25Dec 19, 2024Updated last year
- Her2 Breast Cancer Project☆99Nov 27, 2022Updated 3 years ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆437Updated this week
- Test genes for Spatial Variation☆185May 7, 2024Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆102Feb 26, 2025Updated last year
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆179Jan 8, 2026Updated 4 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆132May 29, 2025Updated last year
- Spatial-Linked Alignment Tool☆92Dec 20, 2024Updated last year
- ☆13Feb 15, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A toolkit of spatial transcriptomic analysis.☆283May 20, 2026Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆87Nov 16, 2025Updated 6 months ago
- Spatial Single Cell Analysis in Python☆571May 20, 2026Updated last week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆458Jan 22, 2026Updated 4 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆65Mar 18, 2024Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆144Feb 20, 2025Updated last year
- ☆131Jun 10, 2022Updated 3 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆70Oct 1, 2023Updated 2 years ago
- Spatial mapping of cell types by integration of transcriptomics data☆100Apr 25, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- spatial transcriptome, single cell☆75Mar 18, 2023Updated 3 years ago
- ☆23Dec 8, 2023Updated 2 years ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 2 years ago
- ☆10Nov 29, 2022Updated 3 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Deep learning on histopathology images.☆145Sep 8, 2021Updated 4 years ago
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated 2 years ago