Alternatives and similar repositories for SoloTE

Users that are interested in SoloTE are comparing it to the libraries listed below

• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆26Updated last year
• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆20Updated this week
• mcgilldinglab / MATES
  A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data
  ☆31Updated 6 months ago
• tanlongzhi / dip-c
  Tools to analyze Dip-C (or other 3C/Hi-C) data
  ☆71Updated 11 months ago
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆112Updated 11 months ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆63Updated 2 years ago
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆54Updated last year
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆23Updated last year
• crickbabs / DRB_TT-seq
  Scripts for the analysis of TT-seq and DRB/TT-seq data.
  ☆11Updated 5 years ago
• ElkonLab / scAPA
  This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.
  ☆23Updated 3 years ago
• FenyoLab / L1EM
  Estimate locus specific human LINE-1 expression.
  ☆39Updated last month
• 3UTR / 3aQTL-pipe
  Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data
  ☆12Updated 2 years ago
• cxzhu / Paired-Tag
  Analysis of Paired-Tag datasets
  ☆43Updated last year
• YaqiangCao / cLoops2
  Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
  ☆52Updated 4 months ago
• wenweixiong / MARVEL
  ☆51Updated last year
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆61Updated 4 years ago
• lrylaarsdam / amethyst
  A comprehensive toolkit for single-cell methylation sequencing data analysis
  ☆25Updated last week
• lkmklsmn / MitoTrace
  ☆18Updated last year
• AmpliconSuite / AmpliconSuite-pipeline
  A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …
  ☆72Updated this week
• Tian-Dechao / diffDomain
  DiffDomain is a statistically sound method for detecting differential TADs between conditions
  ☆18Updated 3 months ago
• Xieeeee / Droplet-Hi-C
  🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript
  ☆14Updated 6 months ago
• bcgsc / RNA-Scoop
  interactive visualization of single-cell transcriptomes
  ☆11Updated last year
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆34Updated 3 years ago
• databio / pepatac
  A modular, containerized pipeline for ATAC-seq data processing
  ☆60Updated last month
• LuyiTian / FLAMES
  Full-length transcriptome splicing and mutation analysis
  ☆84Updated last year
• databio / awesome-atac-analysis
  Links to ATAC-seq analysis tools
  ☆71Updated 4 years ago
• gxiaolab / REDITs
  RNA editing tests
  ☆17Updated 5 years ago
• broadinstitute / PhylogicNDT
  ☆78Updated 6 months ago
• gxiaolab / scAllele
  ☆39Updated last month
• UcarLab / AMULET
  A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.
  ☆31Updated 2 years ago