mm-shah / MetaNeighborLinks
A method to rapidly assess cell type identity using both functional and random gene sets
☆13Updated 6 years ago
Alternatives and similar repositories for MetaNeighbor
Users that are interested in MetaNeighbor are comparing it to the libraries listed below
Sorting:
- Single cell interactive plotting tools☆24Updated 5 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 3 weeks ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
- Algorithms for single-cell analysis☆29Updated 4 years ago
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Updated 4 years ago
- Pairwise Hierarchical Model☆20Updated 3 years ago
- Inference of switch-like differential expression along single-cell trajectories☆21Updated 8 years ago
- R package for gene selection using k-NN graphs.☆13Updated 2 years ago
- Repository for supplemental material of manuscripts☆18Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 5 years ago
- ☆28Updated 6 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 7 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 3 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆21Updated last year
- post-clustering differential expression test☆36Updated 6 years ago
- ☆14Updated 6 years ago
- Trans-association between HLA and TCR-CDR3☆19Updated 2 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago