Automated cell type classification
☆116Jan 3, 2025Updated last year
Alternatives and similar repositories for garnett
Users that are interested in garnett are comparing it to the libraries listed below
Sorting:
- R package for integrating and analyzing multiple single-cell datasets☆424Feb 4, 2026Updated last month
- Clone of the Bioconductor repository for the SingleR package.☆199Feb 27, 2026Updated last week
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Apr 16, 2025Updated 10 months ago
- ☆59Sep 3, 2024Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆238May 8, 2023Updated 2 years ago
- Interactively analyze single cell genomic data☆185Jan 14, 2026Updated last month
- SingleCellNet: classify single cells across species and platforms☆141Aug 21, 2023Updated 2 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆211Jan 9, 2023Updated 3 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆219Feb 26, 2024Updated 2 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆246Aug 18, 2025Updated 6 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆251Jan 10, 2026Updated last month
- A package to help convert different single-cell data formats to each other☆458Feb 20, 2026Updated 2 weeks ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆325Apr 23, 2024Updated last year
- TRAjectory-based Differential Expression analysis for SEQuencing data☆290Jun 17, 2025Updated 8 months ago
- scPred package for cell type prediction from scRNA-seq data☆98Jan 18, 2024Updated 2 years ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆246Updated this week
- ☆442Jan 8, 2026Updated 2 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆622Oct 10, 2025Updated 4 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆526Mar 21, 2025Updated 11 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆219Updated this week
- ☆360Dec 9, 2021Updated 4 years ago
- Multi-sample Unified Discriminant ANalysis☆75Apr 11, 2023Updated 2 years ago
- Clustering scRNAseq by genotypes☆196Nov 11, 2025Updated 3 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆338Updated this week
- Fast Wilcoxon and auROC☆204Nov 8, 2024Updated last year
- iterative clustering pipeline of big single cell datasets.☆36Sep 5, 2025Updated 6 months ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Aug 26, 2020Updated 5 years ago
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆48Apr 8, 2022Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆57Jun 1, 2025Updated 9 months ago
- Simple simulation of single-cell RNA sequencing data☆233Jan 12, 2026Updated last month
- Reference mapping for single-cell genomics☆400Dec 2, 2025Updated 3 months ago
- AUCell: score single cells with gene regulatory networks☆185Mar 9, 2024Updated 2 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated 7 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆422Sep 4, 2025Updated 6 months ago
- Benchmarking analysis of data integration tools☆408Sep 17, 2025Updated 5 months ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Jul 12, 2023Updated 2 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆380Jul 30, 2025Updated 7 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆97Nov 24, 2020Updated 5 years ago
- Methods for detecting doublets in single-cell sequencing data☆231Feb 12, 2026Updated 3 weeks ago