ISUgenomics / common_scripts
my bin directory
☆45Updated 5 months ago
Alternatives and similar repositories for common_scripts:
Users that are interested in common_scripts are comparing it to the libraries listed below
- web documentation for Trinotate☆48Updated 2 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- ☆43Updated 8 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆95Updated last month
- Simple pileup-based variant caller☆88Updated this week
- Synteny Imager☆61Updated 7 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆30Updated this week
- My collection of light bioinformatics analysis pipelines for specific tasks☆73Updated 10 months ago
- perSVade: personalized Structural Variation detection☆39Updated last month
- Same species annotation lift over pipeline.☆97Updated last year
- Scripting analyses of genomes in Ensembl Plants☆39Updated last week
- Drosophila transposable element canonical sequences☆28Updated 2 years ago
- NLR-Annotator upload☆65Updated last year
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 5 months ago
- Genome Annotation Without Nightmares☆43Updated 2 months ago
- A (very) simple script to QC Hi-C data.☆25Updated 4 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- ☆35Updated 2 years ago
- A Nextflow pipeline for evaluating assembly quality☆33Updated 2 weeks ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆53Updated this week
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆84Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated 2 weeks ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 3 months ago