fomightez / sequencework
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
â24Updated last month
Alternatives and similar repositories for sequencework:
Users that are interested in sequencework are comparing it to the libraries listed below
- đ§Ź MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotationsâ32Updated 11 months ago
- Pipeline for the identification of (coding) gene structures in draft genomes.â27Updated 11 months ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functionsâ20Updated last year
- k-mer similarity analysis pipelineâ21Updated this week
- Python bindings for the TaxonKit libraryâ38Updated 3 weeks ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq dataâ21Updated 6 months ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mersâ22Updated 5 years ago
- Toolkit for manipulating FASTA and SAM filesâ18Updated last year
- Annotating principal splice isoformsâ14Updated 6 months ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.â30Updated 6 years ago
- fastest GTF/GFF-to-BED converter chilling aroundâ25Updated 3 months ago
- Library for visualising genomic features in Python.â15Updated 7 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF fâŚâ31Updated 3 years ago
- Find common blocks and differences between DNA sequencesâ42Updated 3 weeks ago
- A python package for showing JBrowse viewsâ25Updated last year
- Catalogue of pairwise alignment algorithms and benchmarksâ25Updated 8 months ago
- SWORD - a highly efficient protein database searchâ26Updated last year
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQâ11Updated 7 years ago
- This BLENDER has been sunsettedâ16Updated 7 months ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.â11Updated 4 years ago
- GRAph-based Finding of Individual Motif Occurrencesâ31Updated 8 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequencesâ38Updated last year
- â22Updated last year
- Build an index for your BAM Index (BAI)â17Updated 10 years ago
- Collection of utilities for working with PacBio-based assembliesâ13Updated 2 years ago
- A Generative Pre-Trained Transformer Package for Pangenomesâ50Updated 11 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.â24Updated last year
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!â24Updated 2 months ago
- map Illumina metagenomes to genomes!â38Updated last month
- Reference-guided multiple sequence alignment of viral genomesâ68Updated 3 months ago