fomightez / sequencework
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
β24Updated last week
Alternatives and similar repositories for sequencework:
Users that are interested in sequencework are comparing it to the libraries listed below
- 𧬠MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotationsβ32Updated 10 months ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mersβ22Updated 5 years ago
- Build an index for your BAM Index (BAI)β17Updated 9 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functionsβ20Updated last year
- A python package for showing JBrowse viewsβ24Updated last year
- k-mer similarity analysis pipelineβ21Updated 2 months ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq dataβ21Updated 5 months ago
- Annotating principal splice isoformsβ14Updated 6 months ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing dataβ12Updated last year
- Nanopore Real-Time Analysis Toolβ16Updated 7 months ago
- pathoscore evaluates variant pathogenicity tools and scores.β21Updated 3 years ago
- Toolkit for manipulating FASTA and SAM filesβ18Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF fβ¦β31Updated 3 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.β11Updated 4 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.β13Updated last year
- Construct a Physical Map from Linked Readsβ18Updated last year
- The command-line interface to GGDβ42Updated 2 years ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at reaβ¦β26Updated 5 years ago
- fastest GTF/GFF-to-BED converter chilling aroundβ25Updated 2 months ago
- Simplify snpEff annotations for interesting casesβ21Updated 6 years ago
- POSTRE: Prediction Of STRuctural variant Effectsβ21Updated last month
- Python bindings for the TaxonKit libraryβ36Updated this week
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.β24Updated last year
- GRAph-based Finding of Individual Motif Occurrencesβ31Updated 7 months ago
- β18Updated 4 years ago
- πΆ Genome assembly with short sequence readsβ25Updated last year
- Library for visualising genomic features in Python.β15Updated 7 years ago
- Master of Pores 2β23Updated 4 months ago
- Evolcust retrieves groups of genes that appear clustered together in groups of speciesβ16Updated 2 years ago
- This BLENDER has been sunsettedβ16Updated 6 months ago