FASSO: Functional Annotations using Sequence and Structure Orthology
☆10Jan 17, 2023Updated 3 years ago
Alternatives and similar repositories for FASSO
Users that are interested in FASSO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is code for running Orthofinder -> PAML☆14Jul 27, 2016Updated 10 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated 2 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated last year
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated 2 years ago
- A tool suite for designing massive protein assmeblies☆12Jun 21, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ⧉ Deploy containers over SSH.☆15Aug 9, 2025Updated last year
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago
- A whole-genome reference database of soil bacteria, fungi, and archaea☆14Jun 19, 2026Updated 4 months ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Nov 24, 2022Updated 3 years ago
- my bin directory☆45Apr 7, 2026Updated 6 months ago
- Metal and Water prediction☆16Feb 5, 2025Updated last year
- ☆18Mar 13, 2024Updated 2 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last month
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Inference of putative transmission phylogenetic clusters☆13Oct 13, 2020Updated 6 years ago
- ☆15Sep 1, 2026Updated 2 months ago
- An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions☆15Mar 4, 2025Updated last year
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆12Apr 25, 2024Updated 2 years ago
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆28Jan 2, 2022Updated 4 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆19Oct 7, 2026Updated 3 weeks ago
- GOMAP-Singularity is the containerized version of GOMAP☆11Jul 16, 2023Updated 3 years ago
- Neurally-derived Potts models for protein design, inspired by dTERMen☆16Aug 23, 2022Updated 4 years ago
- MEGADOCK on Google Colaboratory☆20Oct 2, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Fungal Validation and Identification Pipeline☆16Oct 1, 2026Updated last month
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 5 years ago
- Library for analyzing and manipulating phylogenetic trees☆16Updated this week
- ☆12Sep 14, 2026Updated last month
- The MafFilter genome alignment processor☆19Oct 16, 2026Updated 2 weeks ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆36Jan 3, 2022Updated 4 years ago
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆13Jul 19, 2023Updated 3 years ago
- A CNN based model to predict the efficacy of Cas12a sgRNAs in diagnostic scenarios.☆12Feb 29, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- TelomereSearch - identify telomeric repeats from genome assemblies☆12Jul 5, 2021Updated 5 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Mar 17, 2022Updated 4 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Mar 3, 2023Updated 3 years ago
- ☆10Sep 4, 2024Updated 2 years ago
- Fast, accurate construction of multiple sequence alignments from protein language embeddings☆23Jul 22, 2026Updated 3 months ago
- Paint chromosomes with BUSCOs☆10Sep 25, 2026Updated last month
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year