Maize-Genetics-and-Genomics-Database / FASSOLinks
FASSO: Functional Annotations using Sequence and Structure Orthology
☆10Updated 2 years ago
Alternatives and similar repositories for FASSO
Users that are interested in FASSO are comparing it to the libraries listed below
Sorting:
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆18Updated 8 months ago
- Generation and updating of protein families☆21Updated this week
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 2 months ago
- ☆17Updated last year
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆13Updated 2 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 7 months ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 weeks ago
- ☆11Updated 8 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 5 months ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Updated last year
- Learning and Aligning Large Protein Families with support of protein language models.☆28Updated this week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆78Updated last week
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆18Updated last year
- Nanopore UMI-linked consensus sequencing☆16Updated 4 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆13Updated 5 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated last week
- Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.☆33Updated 3 weeks ago
- ☆19Updated 3 years ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆33Updated last year
- Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…☆16Updated 3 months ago
- Associated code for EvoWeaver publication☆15Updated 6 months ago
- ☆18Updated 4 years ago
- ☆36Updated 4 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated 3 months ago
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 6 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 2 years ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆26Updated this week