Maize-Genetics-and-Genomics-Database / FASSOLinks
FASSO: Functional Annotations using Sequence and Structure Orthology
☆10Updated 3 years ago
Alternatives and similar repositories for FASSO
Users that are interested in FASSO are comparing it to the libraries listed below
Sorting:
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 4 months ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆20Updated 11 months ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 3 months ago
- Generation and updating of protein families☆22Updated last week
- ☆17Updated 2 months ago
- Nanopore UMI-linked consensus sequencing☆16Updated 5 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Updated 10 months ago
- Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparativ…☆17Updated 6 months ago
- Calculate the dn/ds (also pn and ps) value of cds☆13Updated 5 years ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆34Updated last year
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆13Updated 4 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆82Updated 2 months ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Updated 5 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 3 months ago
- ☆11Updated 11 months ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆18Updated 2 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆30Updated this week
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆59Updated 5 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- ☆19Updated 3 years ago
- Metagenome analysis using the Kraken software suite☆36Updated 3 years ago
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 6 years ago
- Genomic sequence aligner☆33Updated 3 months ago
- Plot multiple sequence alignment (MSA)☆16Updated last year
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Updated 3 months ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆19Updated last year
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Updated last year