dib-lab / farm-notes

Related projects ⓘ

Alternatives and complementary repositories for farm-notes

• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆28Updated last year
• NBISweden / workshop-mlbiostatistics
  ☆15Updated last month
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 2 years ago
• twbattaglia / btools
  A set of R functions that help faciliate a lot of tedious processing
  ☆18Updated 6 years ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆21Updated last year
• js2264 / tidyCoverage
  ☆20Updated 2 months ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆33Updated 4 years ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• ELTEbioinformatics / mulea
  mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate
  ☆23Updated last month
• knights-lab / BugBase
  ☆37Updated 6 years ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆22Updated 9 months ago
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 5 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆36Updated last week
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆24Updated last year
• lakarstens / ControllingContaminants16S
  ☆13Updated 4 years ago
• 123xiaochen / VCFshiny
  ☆26Updated 3 weeks ago
• lskatz / awesome-bioinformatics-jobs
  Resources for bioinformatics jobs
  ☆34Updated 8 months ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆15Updated 6 months ago
• EvaYiwenWang / Managing_batch_effects
  ☆13Updated last year
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated 5 months ago
• gtonkinhill / TCGA_analysis
  ☆27Updated last year
• mblstamps / stamps2022
  Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA
  ☆20Updated 2 years ago
• crazyhottommy / scripts-general-use
  ☆16Updated 7 years ago
• GuangchuangYu / plotTree-ggtree
  ggtree version of plotTree.R
  ☆17Updated 6 years ago
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆26Updated 2 months ago
• ying14 / yingtools2
  Ying's tools for analysis, with particular focus on microbiome data
  ☆41Updated this week
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆52Updated 2 months ago
• CharlieCarpenter / tidyMicro
  tidyMicro GitHup Repository
  ☆18Updated 2 years ago
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆20Updated 9 months ago
• itsmisterbrown / microfiltR
  accessory functions for processing microbial community data
  ☆12Updated last year