Alternatives and similar repositories for farm-notes:

Users that are interested in farm-notes are comparing it to the libraries listed below

• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆30Updated last year
• js2264 / tidyCoverage
  ☆21Updated 4 months ago
• twbattaglia / btools
  A set of R functions that help faciliate a lot of tedious processing
  ☆18Updated 6 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated 2 months ago
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated 7 months ago
• gtonkinhill / TCGA_analysis
  ☆27Updated last year
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆27Updated last year
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 2 years ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆21Updated 2 years ago
• crazyhottommy / scripts-general-use
  ☆16Updated 7 years ago
• statdivlab / tinyvamp
  ☆19Updated last year
• thomazbastiaanssen / Tjazi
  A microbiome analysis toolkit for R
  ☆21Updated last year
• NBISweden / workshop-mlbiostatistics
  ☆15Updated 3 months ago
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated 11 months ago
• reptalex / phylofactor
  ☆26Updated 10 months ago
• FEI38750 / MTD
  MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
  ☆17Updated 8 months ago
• mblstamps / stamps2018
  STAMPS 2018 course
  ☆16Updated 6 years ago
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 5 years ago
• 123xiaochen / VCFshiny
  ☆27Updated 3 months ago
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆24Updated last year
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆53Updated 4 months ago
• gavinmdouglas / FuncDiv
  R package for computing alpha and beta contributional diversity metrics
  ☆10Updated last year
• EvaYiwenWang / Managing_batch_effects
  ☆13Updated last year
• lakarstens / ControllingContaminants16S
  ☆13Updated 4 years ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• statdivlab / stamps2019
  statdivlab's teaching materials for STAMPS @ the MBL in 2019
  ☆12Updated 5 years ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆33Updated 4 years ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆24Updated 9 months ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆53Updated last week
• statdivlab / groves
  Tools for analyzing trees
  ☆14Updated last year