dib-lab / farm-notes
notes on the farm cluster
☆16Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for farm-notes
- ☆26Updated last month
- ☆15Updated last month
- A comprehensive and customizable R package for microbiome analysis.☆21Updated last year
- ☆27Updated last year
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 6 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- An academic manuscript template with writing tips in both LaTeX and MS Word format generated by the Capra Lab (2/2022)☆19Updated last year
- Summer school course materials collection☆25Updated 6 years ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 3 weeks ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆29Updated last year
- ☆31Updated 10 months ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 6 months ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- ☆20Updated 2 months ago
- ☆13Updated last year
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆13Updated 3 years ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- Tutorial to reproduce the analysis of Peixoto et al. (2015)☆10Updated 8 years ago
- Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.☆21Updated 6 years ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated last week
- Linear Decomposition Model☆24Updated last year
- Introduction to the Bioconductor project☆18Updated this week
- ☆19Updated last year
- accessory functions for processing microbial community data☆12Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Differential analysis of multi-omics data based on the Tweedie distribution☆27Updated 3 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆22Updated 9 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated this week